Transcript: Mouse XR_001784301.1

PREDICTED: Mus musculus minichromosome maintenance domain containing 2 (Mcmdc2), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mcmdc2 (240697)
Length:
7231
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001784301.1
NBCI Gene record:
Mcmdc2 (240697)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001784301.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000264915 CTATCGGTTCAGTATTCTAAT pLKO_005 5676 3UTR 100% 13.200 10.560 N Mcmdc2 n/a
2 TRCN0000264914 GAGAAGACTGCTTGGATATTT pLKO_005 6578 3UTR 100% 15.000 10.500 N Mcmdc2 n/a
3 TRCN0000264913 CTTTGTGAGTTTCCACTTAAT pLKO_005 5902 3UTR 100% 13.200 9.240 N Mcmdc2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001784301.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13302 pDONR223 100% 18.1% None (many diffs) n/a
2 ccsbBroad304_13302 pLX_304 0% 18.1% V5 (many diffs) n/a
3 TRCN0000472583 ACAAATATGGCAACAGGTCCCGTA pLX_317 22.4% 18.1% V5 (many diffs) n/a
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