Construct: ORF TRCN0000472583

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002972.1_s317c1
Derived from:
ccsbBroadEn_13302
DNA Barcode:
ACAAATATGGCAACAGGTCCCGTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MCMDC2 (157777)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472583
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 157777 MCMDC2 minichromosome maintenance ... NM_001136161.2 99.1% 99.1% 1_15del
2 human 157777 MCMDC2 minichromosome maintenance ... XM_011517469.2 93% 93.1% 1_15del;1770_1884delinsG
3 human 157777 MCMDC2 minichromosome maintenance ... NM_001136160.1 92.5% 92.5% 1_15del;1770_1896delinsG
4 human 157777 MCMDC2 minichromosome maintenance ... XM_011517467.3 87.6% 87.7% 1_15del;1770_2001delinsG
5 human 157777 MCMDC2 minichromosome maintenance ... NM_173518.5 85.8% 85.9% 1_15del;1770_2043delinsG
6 human 157777 MCMDC2 minichromosome maintenance ... XM_006716427.3 82.8% 82.5% (many diffs)
7 human 157777 MCMDC2 minichromosome maintenance ... XM_006716429.2 81.8% 81.9% 1_15del;1070_1071ins81;1689_1962delinsG
8 human 157777 MCMDC2 minichromosome maintenance ... XM_011517468.2 79.6% 79.7% 1_15del;707_708ins126;1644_1917delinsG
9 human 157777 MCMDC2 minichromosome maintenance ... XM_005251174.2 77.7% 76.1% (many diffs)
10 human 157777 MCMDC2 minichromosome maintenance ... XM_006716433.3 51.4% 51.4% 0_1ins711;1044_1317delinsG
11 human 157777 MCMDC2 minichromosome maintenance ... XM_024447078.1 51.4% 51.4% 0_1ins711;1044_1317delinsG
12 human 157777 MCMDC2 minichromosome maintenance ... XM_017013140.1 47.1% 47.2% 0_1ins711;344_345ins81;963_1248delinsG
13 mouse 240697 Mcmdc2 minichromosome maintenance ... NM_177722.3 74.7% 73.8% (many diffs)
14 mouse 240697 Mcmdc2 minichromosome maintenance ... XM_011238376.1 74.7% 73.8% (many diffs)
15 mouse 240697 Mcmdc2 minichromosome maintenance ... XM_011238377.2 72.1% 71% (many diffs)
16 mouse 240697 Mcmdc2 minichromosome maintenance ... XM_017320486.1 52.4% 51.6% (many diffs)
17 mouse 240697 Mcmdc2 minichromosome maintenance ... XR_001784301.1 18.1% (many diffs)
18 mouse 240697 Mcmdc2 minichromosome maintenance ... XR_865162.2 16.4% (many diffs)
19 mouse 240697 Mcmdc2 minichromosome maintenance ... XR_001784300.1 16.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1821
ORF length:
1755
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa agaggcggcc ctcatctatc ttgacagaag tggaggcctc caaaagttta
121tagatgattg caagtactac aatgattcaa aacaaagcta tgctgtctat cgattcaaaa
181ttttaataaa tccctctgat gttgttgaat tagatgctga gcttggaaat cacattttac
241accaaccttt aaaagctgct gaagtctttc aatcagtctg ttttattgct gttaagactc
301tctcattaat tggacaattg cagactgaaa cgcaaattaa tatagtgctg aaattaacac
361atttacctcc cctgccaagt tatggtcttg atctttgtga gtttccactt gattatacat
421ctcagagatt ttatatgatg caaggaattg tgattgcaat gacaactata accaagtata
481cacaaggggc aagatttctt tgttcagatg aagcatgccc tctttcaaaa ggatttcagt
541atataagagt gcatgtgcct ggtgctacag aatctgcaac gataagaaat gactttttgt
601gtaatctatg tgcatcttca cttcaagaag acagaaaatt tagagtactt ggtgataaac
661aaatagttga aataattgcc acaaaggcac ttcgtgcttt tcaaggatat tctaacaacc
721agccatttag gtttcaatca cttacaattt tcctaagaga tgaatcagtg aataaaatga
781atataggaaa tgaatataaa attattggaa ttccaacctg tgtaaaaacc tcacaaactg
841ctgtctgtat agaagcaaat agcataactt tttgtaattc aaaagttcct tcaggaatta
901gtgacaactt caggtgtctc ctctccttaa cttccagctc atgctggaag tttacagcaa
961tacttgccaa tatctttgca tcacaaatta cccctcctgg gacttacaat ttgctcaagc
1021tctgtttgtt gatgagtcta gtacagacaa ctgaccgtaa caaggaactg gaagattgcc
1081tggatatttt aattataaca agtgatactc tactcataga caggcttctg aattttagca
1141taaaccttgt cccccgtggt atacgtcatc tagtctctac tgaaattttt cccactctat
1201ccaggaataa gtatggaact ggagcagtta gcattcaggc tggcagtgct ttgctagcta
1261aaggtggtat ctgctttata ggagacttgg cttcacacaa aaaagataaa cttgaacagc
1321ttcaaacagt tctggagagc agaagcatca cagtgtacat cccaggaaag aagtttgggg
1381aggatattga tcaacagatg acttttccag ttcagtgcag tttttggtct tttGTTGATG
1441TGGATTCATC TTCAAGGAGA AATGCACAGA AAATCAACAC TCTAATTGGT CAGATGGATT
1501GCAGTTTGAT TCCAGCTAAC CTTGTGGAGG CATTTGGTTT ATTGATTAAC TGCAACGAGT
1561CATCTCCCTG CCACCCATTT CTTCCTACTG TGCAACACAC TTTGAACAAA GCCATTAATC
1621CTGAAGGGCT GTTTTATGCG GCTTCTAGAC AGTTCACAAC TGAAGATTTT GAAAAGCTAT
1681TGGCTTTTGC AAAGAATTTG AATGTAGAAT TCAGCTTGGA AGCAGAAAGA ATGACCCATG
1741GCTATTATCT AGCAAGTCGC AGAATCAGAA CAGGCTCTGT ATGTGGATCA AAGCTGTCAG
1801CATCTGCATT AAAATATCTG TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1861CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1921AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAACAA ATATGGCAAC
1981AGGTCCCGTA ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)