Transcript: Mouse XR_001784672.1

PREDICTED: Mus musculus GUF1 homolog, GTPase (Guf1), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Guf1 (231279)
Length:
6389
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001784672.1
NBCI Gene record:
Guf1 (231279)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001784672.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000141467 CCTGGGTTTAAATCAGCGAAA pLKO.1 1136 3UTR 100% 4.050 3.240 N GUF1 n/a
2 TRCN0000102715 CTCTGTTCCTTCTCATTTATA pLKO.1 2353 3UTR 100% 15.000 10.500 N Guf1 n/a
3 TRCN0000102719 CCAGCGATTAGAGCAAGAATA pLKO.1 1336 3UTR 100% 13.200 9.240 N Guf1 n/a
4 TRCN0000102717 CCTGGAGCTAACAGGAACAAT pLKO.1 358 3UTR 100% 5.625 3.938 N Guf1 n/a
5 TRCN0000102716 CCCAGACAACTGTATGAGATA pLKO.1 2094 3UTR 100% 4.950 3.465 N Guf1 n/a
6 TRCN0000102718 GACAACTGTATGAGATAGCAA pLKO.1 2098 3UTR 100% 3.000 2.100 N Guf1 n/a
7 TRCN0000140140 GCCTGGGTTTAAATCAGCGAA pLKO.1 1135 3UTR 100% 2.640 1.848 N GUF1 n/a
8 TRCN0000145002 GATAGCAATTCAAGCTGCTAT pLKO.1 2111 3UTR 100% 0.495 0.396 N GUF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001784672.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.