Transcript: Human XR_002956289.1

PREDICTED: Homo sapiens AT-rich interaction domain 1B (ARID1B), transcript variant X7, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARID1B (57492)
Length:
8443
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956289.1
NBCI Gene record:
ARID1B (57492)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956289.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415830 TGGTCACGTTGGCCAACATTT pLKO_005 6390 3UTR 100% 13.200 18.480 N ARID1B n/a
2 TRCN0000436265 TGCTGTCTAGTGCATTCAAAG pLKO_005 7315 3UTR 100% 10.800 15.120 N ARID1B n/a
3 TRCN0000107362 GCCGTCTATGAAGATGCAGAA pLKO.1 5041 3UTR 100% 4.050 5.670 N ARID1B n/a
4 TRCN0000416443 GGGTTTGGCCCAGGTTAATAA pLKO_005 3746 3UTR 100% 15.000 12.000 N ARID1B n/a
5 TRCN0000424323 GTGGGCTTTGGACACTATTAA pLKO_005 5272 3UTR 100% 15.000 10.500 N ARID1B n/a
6 TRCN0000420576 GAAGATTAGAGGGTCACATAT pLKO_005 7096 3UTR 100% 13.200 9.240 N ARID1B n/a
7 TRCN0000107364 GCACGCAATGATATGCCTTAT pLKO.1 4715 3UTR 100% 10.800 7.560 N ARID1B n/a
8 TRCN0000107360 CCACAGGAATATGGTTCCATT pLKO.1 7644 3UTR 100% 4.950 3.465 N ARID1B n/a
9 TRCN0000107363 GCAGTATATTCAGTACCTGTT pLKO.1 3842 3UTR 100% 4.050 2.835 N ARID1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956289.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.