Transcript: Human XR_002956823.1

PREDICTED: Homo sapiens FYVE, RhoGEF and PH domain containing 3 (FGD3), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FGD3 (89846)
Length:
3040
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956823.1
NBCI Gene record:
FGD3 (89846)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956823.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243296 GTTCAACAGCATGATCCTTTA pLKO_005 1431 3UTR 100% 10.800 15.120 N FGD3 n/a
2 TRCN0000243300 AGAAGTCATCATGGGCATATT pLKO_005 831 3UTR 100% 13.200 9.240 N FGD3 n/a
3 TRCN0000243299 CAAAGTAACCATCATCCATAT pLKO_005 2650 3UTR 100% 10.800 7.560 N FGD3 n/a
4 TRCN0000149421 CAGAAGTCATCATGGGCATAT pLKO.1 830 3UTR 100% 10.800 7.560 N FGD3 n/a
5 TRCN0000183671 CATGGGCATATTCTCTAACAT pLKO.1 840 3UTR 100% 5.625 3.938 N FGD3 n/a
6 TRCN0000180171 CGGCGAGTATGTCAAGAACTT pLKO.1 990 3UTR 100% 4.950 3.465 N FGD3 n/a
7 TRCN0000243297 AGAGCTGAGTGGTAGCTTAAA pLKO_005 438 3UTR 100% 13.200 7.920 N FGD3 n/a
8 TRCN0000243298 CAGCACATACATTCATCATAA pLKO_005 1550 3UTR 100% 13.200 7.920 N FGD3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956823.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.