Transcript: Human XR_002957331.1

PREDICTED: Homo sapiens tyrosyl-tRNA synthetase 2 (YARS2), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
YARS2 (51067)
Length:
2595
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002957331.1
NBCI Gene record:
YARS2 (51067)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002957331.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000215482 GAATGGACTTTCCTTACTTAA pLKO.1 1952 3UTR 100% 13.200 18.480 N Yars2 n/a
2 TRCN0000146614 CCTTCTGGTTGTCCAAATAAA pLKO.1 2027 3UTR 100% 15.000 10.500 N YARS2 n/a
3 TRCN0000148708 CTGGAACAAGTGTCCTAGATA pLKO.1 1798 3UTR 100% 5.625 3.938 N YARS2 n/a
4 TRCN0000149028 GTCCGGATATGAGTTCATCAA pLKO.1 1340 3UTR 100% 4.950 3.465 N YARS2 n/a
5 TRCN0000149593 CCAGAACTTAGACCTTTGCTT pLKO.1 2089 3UTR 100% 3.000 2.100 N YARS2 n/a
6 TRCN0000147880 GTACCCTAAATCTCTCAGTAT pLKO.1 631 3UTR 100% 0.000 0.000 N YARS2 n/a
7 TRCN0000280694 TTCTCTATCAGCCTCTATTTG pLKO_005 2430 3UTR 100% 13.200 6.600 Y NAP1L1 n/a
8 TRCN0000092890 GCCAAATTCTATGAGGAAGTT pLKO.1 2384 3UTR 100% 4.950 2.475 Y Nap1l1 n/a
9 TRCN0000149872 GCCAAATTCTATGAGGAAGTT pLKO.1 2384 3UTR 100% 4.950 2.475 Y NAP1L1 n/a
10 TRCN0000280692 GCCAAATTCTATGAGGAAGTT pLKO_005 2384 3UTR 100% 4.950 2.475 Y NAP1L1 n/a
11 TRCN0000149610 GAAGCCAAATTCTATGAGGAA pLKO.1 2381 3UTR 100% 2.640 1.320 Y NAP1L1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002957331.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03188 pDONR223 100% 55.1% None 1_584del;2016_2595del n/a
2 ccsbBroad304_03188 pLX_304 0% 55.1% V5 1_584del;2016_2595del n/a
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