Transcript: Human XR_002957784.1

PREDICTED: Homo sapiens deoxyribonuclease 1 (DNASE1), transcript variant X17, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DNASE1 (1773)
Length:
2019
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002957784.1
NBCI Gene record:
DNASE1 (1773)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002957784.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234776 AGCGCTACCTGTTCGTGTACA pLKO_005 1515 3UTR 100% 4.950 6.930 N DNASE1 n/a
2 TRCN0000234779 GACTCGGCTCTTCCCTTTAAC pLKO_005 1999 3UTR 100% 13.200 10.560 N DNASE1 n/a
3 TRCN0000049682 ACCTGGATGTCCAAGAGAAAT pLKO.1 1769 3UTR 100% 13.200 9.240 N DNASE1 n/a
4 TRCN0000049680 GCCTTCAACATCCAGACATTT pLKO.1 1295 3UTR 100% 13.200 9.240 N DNASE1 n/a
5 TRCN0000049678 GTCAGGGAGTTTGCCATTGTT pLKO.1 1690 3UTR 100% 5.625 3.938 N DNASE1 n/a
6 TRCN0000234778 TCATGTTGATGGGCGACTTCA pLKO_005 1805 3UTR 100% 4.950 3.465 N DNASE1 n/a
7 TRCN0000234777 TGCGGTGGACAGCTACTACTA pLKO_005 1552 3UTR 100% 4.950 3.465 N DNASE1 n/a
8 TRCN0000049679 GCCGAGATCGACGCTCTCTAT pLKO.1 1741 3UTR 100% 1.650 1.155 N DNASE1 n/a
9 TRCN0000234775 ACTGGGACGGAACAGCTATAA pLKO_005 1492 3UTR 100% 13.200 7.920 N DNASE1 n/a
10 TRCN0000049681 CTCGGCTCTTCCCTTTAACTT pLKO.1 2001 3UTR 100% 5.625 3.938 N DNASE1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002957784.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.