Transcript: Human XR_002958322.1

PREDICTED: Homo sapiens zinc finger protein 44 (ZNF44), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF44 (51710)
Length:
8560
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002958322.1
NBCI Gene record:
ZNF44 (51710)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002958322.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235273 ACTGGAGAGAAACCTTATAAA pLKO_005 2294 3UTR 100% 15.000 7.500 Y Gm10771 n/a
2 TRCN0000337271 ACTGGAGAGAAACCTTATAAA pLKO_005 2294 3UTR 100% 15.000 7.500 Y ZNF286B n/a
3 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1455 3UTR 100% 13.200 6.600 Y Zfp934 n/a
4 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1455 3UTR 100% 13.200 6.600 Y 2810408B13Rik n/a
5 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1455 3UTR 100% 13.200 6.600 Y EG668616 n/a
6 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 2127 3UTR 100% 5.625 2.813 Y ZNF345 n/a
7 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 2212 3UTR 100% 13.200 6.600 Y Zfp977 n/a
8 TRCN0000107953 GCTGTGAACTTCACCCAGGAA pLKO.1 824 3UTR 100% 2.640 1.320 Y ZNF799 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002958322.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.