Transcript: Mouse XR_003946376.1

PREDICTED: Mus musculus serine/threonine kinase 33 (Stk33), transcript variant X16, misc_RNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Stk33 (117229)
Length:
2277
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_003946376.1
NBCI Gene record:
Stk33 (117229)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_003946376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000221230 CCACACATAAGAATGGACGAT pLKO.1 724 3UTR 100% 2.640 3.696 N Stk33 n/a
2 TRCN0000221232 GAGTATTGGTAGTACAGAATT pLKO.1 564 3UTR 100% 0.000 0.000 N Stk33 n/a
3 TRCN0000360854 CTCGCTTAGTTCTACTCAAAT pLKO_005 2103 3UTR 100% 13.200 10.560 N Stk33 n/a
4 TRCN0000360780 TTGCATCAGCCATCGCATATC pLKO_005 1085 3UTR 100% 10.800 8.640 N Stk33 n/a
5 TRCN0000221231 GCAAGACCAACCAATGTATTA pLKO.1 1502 3UTR 100% 13.200 9.240 N Stk33 n/a
6 TRCN0000221233 CATCGCATATCTTCATAACAA pLKO.1 1095 3UTR 100% 5.625 3.938 N Stk33 n/a
7 TRCN0000221229 GCAGTGTGACATTTGGAGCAT pLKO.1 1329 3UTR 100% 2.640 1.848 N Stk33 n/a
8 TRCN0000360852 ATGTCACAGACATCGAGTATT pLKO_005 550 3UTR 100% 13.200 7.920 N Stk33 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_003946376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.