Transcript: Human XR_243214.3

PREDICTED: Homo sapiens WD repeat domain 73 (WDR73), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
WDR73 (84942)
Length:
1788
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_243214.3
NBCI Gene record:
WDR73 (84942)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_243214.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330837 AGGTCTATCTTTGATCTAAAG pLKO_005 266 3UTR 100% 10.800 15.120 N WDR73 n/a
2 TRCN0000135695 CGTAGTGATATTGCGAAGGTT pLKO.1 1547 3UTR 100% 3.000 4.200 N WDR73 n/a
3 TRCN0000135232 CGAAGGTTAGAAGAAACGCAT pLKO.1 1560 3UTR 100% 2.640 3.696 N WDR73 n/a
4 TRCN0000330900 CGAAGGTTAGAAGAAACGCAT pLKO_005 1560 3UTR 100% 2.640 3.696 N WDR73 n/a
5 TRCN0000330839 AGTGGCCTTCCAGGTTGTTAT pLKO_005 317 3UTR 100% 13.200 9.240 N WDR73 n/a
6 TRCN0000330838 ATGGTACAGTCCAGGTCTATG pLKO_005 1117 3UTR 100% 10.800 7.560 N WDR73 n/a
7 TRCN0000137656 CCTGAAGAATTGCTTGGCCAT pLKO.1 1085 3UTR 100% 2.160 1.512 N WDR73 n/a
8 TRCN0000135759 CACATACCAGATTGCTGGTTA pLKO.1 294 3UTR 100% 0.495 0.347 N WDR73 n/a
9 TRCN0000330836 GAGGACAGTGATGTCATTAAA pLKO_005 359 3UTR 100% 15.000 9.000 N WDR73 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_243214.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.