Transcript: Mouse XR_374509.2

PREDICTED: Mus musculus NOP56 ribonucleoprotein (Nop56), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nop56 (67134)
Length:
2275
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_374509.2
NBCI Gene record:
Nop56 (67134)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_374509.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000323520 TCTCGTGCCAAAGTTAAATTT pLKO_005 564 3UTR 100% 15.000 21.000 N Nop56 n/a
2 TRCN0000215535 GTTCGTCTGCATTTCCATAAT pLKO.1 480 3UTR 100% 13.200 18.480 N Nop56 n/a
3 TRCN0000173844 CACTTACCTTCGCTCCAAGAT pLKO.1 953 3UTR 100% 4.950 6.930 N Nop56 n/a
4 TRCN0000276906 CACTTACCTTCGCTCCAAGAT pLKO_005 953 3UTR 100% 4.950 6.930 N Nop56 n/a
5 TRCN0000217755 CCGAGTGGACAACATGATTAT pLKO.1 593 3UTR 100% 13.200 10.560 N Nop56 n/a
6 TRCN0000217854 GTGCTTAACCTTGGCAAATTC pLKO.1 213 3UTR 100% 13.200 10.560 N Nop56 n/a
7 TRCN0000276851 CGAGTGGACAACATGATTATT pLKO_005 594 3UTR 100% 15.000 10.500 N Nop56 n/a
8 TRCN0000217836 CTACTCTCGTGCCAAAGTTAA pLKO.1 560 3UTR 100% 13.200 9.240 N Nop56 n/a
9 TRCN0000173821 CCCAAGATTGGTGCTGCAATA pLKO.1 399 3UTR 100% 10.800 7.560 N Nop56 n/a
10 TRCN0000146888 CTTGATAAACATCGAGAGCTT pLKO.1 887 3UTR 100% 2.640 1.848 N NOP56 n/a
11 TRCN0000176091 GAGAAGTTAGAGAAACTGGAA pLKO.1 783 3UTR 100% 2.640 1.848 N Nop56 n/a
12 TRCN0000173888 GAGCTGGTGAAGATCGTCAAT pLKO.1 702 3UTR 100% 4.950 2.970 N Nop56 n/a
13 TRCN0000323455 GAGCTGGTGAAGATCGTCAAT pLKO_005 702 3UTR 100% 4.950 2.970 N Nop56 n/a
14 TRCN0000193672 CCTAGCAAACAAATGCAGTAT pLKO.1 1402 3UTR 100% 4.950 2.475 Y Nop56 n/a
15 TRCN0000173939 GCCTGAAGTTGCTGCTAACTT pLKO.1 2115 3UTR 100% 0.563 0.281 Y Nop56 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_374509.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.