Transcript: Mouse XR_382046.2

PREDICTED: Mus musculus EDAR (ectodysplasin-A receptor)-associated death domain (Edaradd), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Edaradd (171211)
Length:
1596
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_382046.2
NBCI Gene record:
Edaradd (171211)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_382046.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000364209 CCCACGCTGGAGTTCTTATTC pLKO_005 1220 3UTR 100% 13.200 18.480 N Edaradd n/a
2 TRCN0000364208 ACCGGCCTCCCTAAAGCTAAA pLKO_005 869 3UTR 100% 10.800 15.120 N Edaradd n/a
3 TRCN0000193902 CCTAAAGCTAAAGAGTGTGAT pLKO.1 878 3UTR 100% 4.950 6.930 N Edaradd n/a
4 TRCN0000368868 ATTCCAACTGTCCACCAAATT pLKO_005 906 3UTR 100% 13.200 10.560 N Edaradd n/a
5 TRCN0000364259 CGATCAGGACTTGCTAGATAC pLKO_005 1084 3UTR 100% 10.800 7.560 N Edaradd n/a
6 TRCN0000173513 GCTGGAGTTCTTATTCCGAAA pLKO.1 1225 3UTR 100% 4.050 2.835 N Edaradd n/a
7 TRCN0000194614 GCATGCCCTATGATGAACTGT pLKO.1 1173 3UTR 100% 3.000 2.100 N Edaradd n/a
8 TRCN0000173178 CCAAATTCTGATGACCAACCT pLKO.1 920 3UTR 100% 2.640 1.848 N Edaradd n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_382046.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.