Transcript: Mouse XR_385283.3

PREDICTED: Mus musculus phosphatidylinositol glycan anchor biosynthesis, class Q (Pigq), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pigq (14755)
Length:
3233
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_385283.3
NBCI Gene record:
Pigq (14755)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_385283.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243327 TCCGCCTCCTGATGCAGATAA pLKO_005 1884 3UTR 100% 13.200 18.480 N PIGQ n/a
2 TRCN0000018430 GATAAGCTATATCCACCTTAT pLKO.1 1484 3UTR 100% 1.080 1.512 N Pigq n/a
3 TRCN0000345691 GATAAGCTATATCCACCTTAT pLKO_005 1484 3UTR 100% 1.080 1.512 N Pigq n/a
4 TRCN0000243326 AGGTCATGCTCATCTTCTATG pLKO_005 613 3UTR 100% 10.800 7.560 N PIGQ n/a
5 TRCN0000018429 CGCTCTGTACTACCTGGTATT pLKO.1 1696 3UTR 100% 10.800 7.560 N Pigq n/a
6 TRCN0000345692 CGCTCTGTACTACCTGGTATT pLKO_005 1696 3UTR 100% 10.800 7.560 N Pigq n/a
7 TRCN0000178916 CAGGTCATGCTCATCTTCTAT pLKO.1 612 3UTR 100% 5.625 3.938 N PIGQ n/a
8 TRCN0000018426 CCTGTCCTATAACCATGTGAT pLKO.1 1909 3UTR 100% 4.950 3.465 N Pigq n/a
9 TRCN0000345693 CCTGTCCTATAACCATGTGAT pLKO_005 1909 3UTR 100% 4.950 3.465 N Pigq n/a
10 TRCN0000018428 CTCTTCCGAAATGACCAATTT pLKO.1 762 3UTR 100% 13.200 7.920 N Pigq n/a
11 TRCN0000345765 CTCTTCCGAAATGACCAATTT pLKO_005 762 3UTR 100% 13.200 7.920 N Pigq n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_385283.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.