Transcript: Mouse XR_388470.2

PREDICTED: Mus musculus PHD finger protein 12 (Phf12), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Phf12 (268448)
Length:
2639
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_388470.2
NBCI Gene record:
Phf12 (268448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_388470.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000084420 CGGAGAAATCGAGATAAATAT pLKO.1 2394 3UTR 100% 15.000 21.000 N Phf12 n/a
2 TRCN0000218527 GAAGGTTCCTGATGCTATAAA pLKO_005 1262 3UTR 100% 15.000 21.000 N PHF12 n/a
3 TRCN0000416950 GAAGGTTCCTGATGCTATAAA pLKO_005 1262 3UTR 100% 15.000 21.000 N Phf12 n/a
4 TRCN0000084419 CCAACTCACTTCGAGCATTTA pLKO.1 2363 3UTR 100% 13.200 18.480 N Phf12 n/a
5 TRCN0000430159 AGCATGAGTTAGACCATAATG pLKO_005 904 3UTR 100% 13.200 9.240 N Phf12 n/a
6 TRCN0000015703 GCTGATATTAAGCCTGTTATT pLKO.1 1521 3UTR 100% 13.200 9.240 N PHF12 n/a
7 TRCN0000230208 TGCGCTCCAGTGCAGCATATT pLKO_005 1442 3UTR 100% 13.200 9.240 N PHF12 n/a
8 TRCN0000422162 TGCGCTCCAGTGCAGCATATT pLKO_005 1442 3UTR 100% 13.200 9.240 N Phf12 n/a
9 TRCN0000084422 CCTGAACCGAATCCACAAGAA pLKO.1 1193 3UTR 100% 4.950 3.465 N Phf12 n/a
10 TRCN0000015705 CGAAAGAAACGAGAGCAGAAA pLKO.1 447 3UTR 100% 4.950 3.465 N PHF12 n/a
11 TRCN0000423891 AGACAGAGAAGGCTGATATTA pLKO_005 1510 3UTR 100% 15.000 9.000 N Phf12 n/a
12 TRCN0000015706 CATCGAGAACACCAGCACTTT pLKO.1 2030 3UTR 100% 4.950 2.970 N PHF12 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_388470.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.