Transcript: Human XR_430544.2

PREDICTED: Homo sapiens integrator complex subunit 6 like (INTS6L), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
INTS6L (203522)
Length:
3843
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_430544.2
NBCI Gene record:
INTS6L (203522)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_430544.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000111189 CGTTGGGATCAAAGGTTATTT pLKO.1 850 3UTR 100% 15.000 21.000 N Ints6l n/a
2 TRCN0000152042 CGTTGGGATCAAAGGTTATTT pLKO.1 850 3UTR 100% 15.000 21.000 N INTS6L n/a
3 TRCN0000365037 GTTGGGATCAAAGGTTATTTG pLKO_005 851 3UTR 100% 13.200 18.480 N INTS6L n/a
4 TRCN0000377439 TATGTACGACCTAACTCTAAA pLKO_005 1180 3UTR 100% 13.200 18.480 N INTS6L n/a
5 TRCN0000153619 CGCTGTGGAGTTATTCTTGAA pLKO.1 453 3UTR 100% 4.950 6.930 N INTS6L n/a
6 TRCN0000152575 GCAACATTCATGAGCGAACTA pLKO.1 574 3UTR 100% 4.950 6.930 N INTS6L n/a
7 TRCN0000370076 GGATATCCATTTGGTTATTTA pLKO_005 1459 3UTR 100% 15.000 10.500 N INTS6L n/a
8 TRCN0000376543 TGCAATATTCAGGATAGTTTG pLKO_005 3447 3UTR 100% 10.800 7.560 N INTS6L n/a
9 TRCN0000370037 TTGCACAAATGGGTAACTATC pLKO_005 2126 3UTR 100% 10.800 7.560 N INTS6L n/a
10 TRCN0000150967 GCCCTTAACTCAGTATATCTT pLKO.1 1371 3UTR 100% 5.625 3.938 N INTS6L n/a
11 TRCN0000153839 CCATCACAGATGGAAACAAGT pLKO.1 743 3UTR 100% 4.950 3.465 N INTS6L n/a
12 TRCN0000158175 CCTTCGCCCTTAACTCAGTAT pLKO.1 1366 3UTR 100% 4.950 3.465 N INTS6L n/a
13 TRCN0000157539 GTGAGGTTCTCCTGTGTAGAT pLKO.1 1294 3UTR 100% 4.950 3.465 N INTS6L n/a
14 TRCN0000156707 CCACGAACATCTCATCCTGTT pLKO.1 1273 3UTR 100% 4.050 2.835 N INTS6L n/a
15 TRCN0000365084 TGCCTCCATACTACCTATTAA pLKO_005 1631 3UTR 100% 15.000 10.500 N INTS6L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_430544.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.