Transcript: Mouse XR_878099.2

PREDICTED: Mus musculus alpha thalassemia/mental retardation syndrome X-linked (Atrx), transcript variant X16, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Atrx (22589)
Length:
6280
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_878099.2
NBCI Gene record:
Atrx (22589)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_878099.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081909 CCCACGGATGAGAATGTAAAT pLKO.1 358 3UTR 100% 13.200 18.480 N Atrx n/a
2 TRCN0000302074 CCCACGGATGAGAATGTAAAT pLKO_005 358 3UTR 100% 13.200 18.480 N Atrx n/a
3 TRCN0000081911 CCACTAACACTCCTGAGGATT pLKO.1 1562 3UTR 100% 4.950 3.465 N Atrx n/a
4 TRCN0000302007 CCACTAACACTCCTGAGGATT pLKO_005 1562 3UTR 100% 4.950 3.465 N Atrx n/a
5 TRCN0000081912 GCTATGAAGTTATGTCAACTT pLKO.1 1228 3UTR 100% 0.495 0.347 N Atrx n/a
6 TRCN0000302073 GCTATGAAGTTATGTCAACTT pLKO_005 1228 3UTR 100% 0.495 0.347 N Atrx n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_878099.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.