Transcript: Human XR_942444.2

PREDICTED: Homo sapiens MYB proto-oncogene, transcription factor (MYB), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MYB (4602)
Length:
2013
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_942444.2
NBCI Gene record:
MYB (4602)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_942444.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040060 GCTCCTAATGTCAACCGAGAA pLKO.1 1058 3UTR 100% 4.050 5.670 N MYB n/a
2 TRCN0000288659 GCTCCTAATGTCAACCGAGAA pLKO_005 1058 3UTR 100% 4.050 5.670 N MYB n/a
3 TRCN0000295917 ACTATTCCTATTACCACATTT pLKO_005 886 3UTR 100% 13.200 9.240 N MYB n/a
4 TRCN0000040059 GCTATCAAGAACCACTGGAAT pLKO.1 696 3UTR 100% 4.950 3.465 N MYB n/a
5 TRCN0000288601 GCTATCAAGAACCACTGGAAT pLKO_005 696 3UTR 100% 4.950 3.465 N MYB n/a
6 TRCN0000009853 GAACAGAATGGAACAGATGAC pLKO.1 324 3UTR 100% 4.050 2.430 N MYB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_942444.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01052 pDONR223 100% 57.5% None (many diffs) n/a
2 ccsbBroad304_01052 pLX_304 0% 57.5% V5 (many diffs) n/a
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