Nucleotide Global Alignment

Description

Query:
TRCN0000466607
Subject:
XR_002958675.1
Aligned Length:
4498
Identities:
860
Gaps:
3537

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCATCCTATGAATTGGGTCATTCATGTCCTACCCAGCTAAAACAGAGGCCAGGAGCCAGGGAGGAAAAGCAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGCCACACAACATTGTTTCCGAAATGGACTTCTCTGCAAGCCTGACTCCTGAGACTGTGCATTGTACCCTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AACCAGCTTTATCCATAGCTTCTGCGATAAATGGCTGTAAGTCTTGGACTCCTTGCTCCAAACGCAGCGACTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAATAGAACCTCCCAGCTCCCAGCCCTTCCTAGTGCCCATGGGCTTTACATAGGGCAAGAGAACATTTCTCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTATAATTGCCATCTCTTTGCTCTCTCAACATGGTGAACACCATCCGGACTCCGTGTATGTCTCAAATTACAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTCTTTCTTTGCAAATGAAATATGAAATTTAGAGGCTCTTCTAAACACTTTAAATTTGATTTGACATTTTCAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAGATGTAAGTTTTAGAGAATGAGATTCTCCATAAAAATGACCCTTTCATGCTGTGGCCTCCATAGAAGATGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCAGGCCAGGTGCCCACATGGCAGGCATTTATTTTCTCACAGATCTGGAAGCTGCAGGTCCAACTTCGAGGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTGGGGTTGTTTCCTCTGAGGCCGCTCCTTCTGGCTGGCAGGGAGTCTCTTCCAGCCGTGTCCTCTGTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTCCTCTATGCACACGCACCTCTGGGATCTCTCTGCCTCCAAATATCATCTTTTTTTTTTTTTTTTTTTTTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGAGACAGAGTGTTGCTCCTCTTGTCCAGGCTGGAATGCAATGGCACAATCTGGACTCACTGCAACCTCCGCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCCCGAGTTTAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAAAAGGCATGCATCACCACACCTGGTTAATTTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TAGTTTTAGTAGAGATGGGGTCTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCTCAGCCTCTCCAAGTGCTGGGATTACAGGCATCAGCCACTATGCCCGGCTGGGATCATATGTTCCACACAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTTTGTTCAATAAGCATGGACTGCAACCACCTACATGAATATTCATAGCTCCTCCTGTAGCCTGTTGAATATGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATGTTTAGCCAACCTCTTCAGCATAAAGCTCCTGCCCAAACCCCTCCTGCTCCTAAATGTCTGTCTCTGGTGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACCAGAGGCTGCTCTTCCCAGGCTGCTGGATGGCTACCTTGCAGGCTGTCACCCTTAACAAGAAATAAAGTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTTTGCAAATGCATCCCTTGTGTAATTTGTAGGTCACCGCGCCATGGGAACACGCTACCATGGGAAGGGAGCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGAGACGCGCAGGGAGGCTCCAGACAGGCTGGCCTGGGACACCAGCCGCTGCCCTTCCATAACATGGGGACAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGAGGGCAAAAGTTCAGCCCAACACGGAGGATCTTCGGGCAGGAGATGGGGAAGAAGGAGAAGCAGGAAGGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGAGCTCAGTGTGGGGGCGCGCATGGCATCCCGGTGGGACATCTGAGGCCCACACCCACCTGCTGTCCCTCCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCCACGGTGGCCACCGAGGGTGAAGGCCTGGGGGGAGGCAGACGCCTGGCCCTTTACTCTCCCTCCCTGTCCCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGGCCGCTGGGTGGGGGCCGTCTCTGGGATGATCCCCGAGGGCAGGATCCGGGAGTCCCTGCAGAGGCATCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTGTCTGTCTTGATGGTGGAGTGGCGGCTCCAGCTGGGCGGGACCACCAGGGGAGGGGCTTGTGCTCTGCTGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCAGCCTGGTGTGGACCCACCTCCCGGGCGCTGGCTGCAATGACTTTCTCTTTCCCTTTGCAATTGCCTTGGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCCTGCCGCACAGAGCGGCCTGTCTTTATCAGAGGTCCCTCTGCCAGGGGGAGGGCCCCAGAGAAAACCAGAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GAGGGTGAGAGACTGAGGAAGATAAAGCGTCCCAGGGCCTCCTACACCAGCGCCTGAGCAGGAAGGGGGAGGGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCATGACTACGAGGCCCTGGGAGGTCACTTTAGGGAGGGCTGTCCTGAAACCTGGAGCCTGGAGCAGAAAGTGA  2072

Query    1  -------------------------------------------------ATGAATCCACAGATCAGAAATCCGA  25
                                                             |||||.||.||..|||||||..|..
Sbjct 2073  AACCCTGGTGCTCCAGACAAAGATCTTAGTCGGGACTAGCCGGCCAAGGATGAAGCCTCACTTCAGAAACACAG  2146

Query   26  TGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACCCATCCTCTATGGTCGGAGCTACACT  99
            |||||||.|||||||||||||||||||.|.||||||||.|.||...|||||||||.|.|.|||||| .|||..|
Sbjct 2147  TGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGA-ATACCGT  2219

Query  100  -TGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCC  172
             |||||||||||.||||||||||.|||   |||.|.|||||..|.||.||.||||.||..|.||||||||||||
Sbjct 2220  CTGGCTGTGCTACGAAGTGAAAACAAA---GGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCC  2290

Query  173  CGGTACTACCCAAACGTCAGTCGAATCACAGGCAGGAGGTGTATTTCCGGTTTGAGAACCACGCAGAAATGTGC  246
                                                |||||||||.||.|..||||.|||||||||||||||||
Sbjct 2291  ------------------------------------AGGTGTATTCCCAGCCTGAGCACCACGCAGAAATGTGC  2328

Query  247  TTCTTATCTTGGTTCTGTGGCAACCGACTGCCTGCTAACAGGCGCTTCCAGATCACCTGGTTTGTATCATGGAA  320
            |||.|.|||||||||||||||||||..|||||||||.|||.|.|.|||||||||||||||||||||||.||||.
Sbjct 2329  TTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGAC  2402

Query  321  CCCCTGCCTGCCCTGTGTGGTGAAGGTGACCAAATTCTTGGCTGAGCACCCCAATGTCACCCTGACCATCTCTG  394
            ||||||||.|..||||||||.||||.||.||.|||||.||||||||||||||||||||||||||||||||||.|
Sbjct 2403  CCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTGGCTGAGCACCCCAATGTCACCCTGACCATCTCCG  2476

Query  395  CCGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGGGTGCTCCTCAGGCTGCATAAGGCAGGGGCCCGT  468
            ||||||||||||||||||||.||||.|||||||..||..|||.||||..|||||||..|.|||||||||||||.
Sbjct 2477  CCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGC  2550

Query  469  GTGAAGATCATGGACTATGAAGACTTTGCATACTGCTGGGAAAACTTTGTGTGCAATGAAGGTCAGCCATTCAT  542
            ||||||||.||||||.|||||||.||||||||||||||||||||||||||||.||.||||||||||||||||||
Sbjct 2551  GTGAAGATTATGGACGATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAGTGAAGGTCAGCCATTCAT  2624

Query  543  GCCTTGGTACAAATTCGATGACAATTATGCATCCCTGCACCGCACGCTAAAGGAGATTCTCAGAAACCCGATGG  616
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||              
Sbjct 2625  GCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCT--------------  2684

Query  617  AGGCAATGTACCCACACATATTCTACTTCCACTTTAAAAACCTACTGAAAGCCTGTGGTCGGAACGAAAGCTGG  690
                                                                                      
Sbjct 2685  --------------------------------------------------------------------------  2684

Query  691  CTGTGCTTCACCATGGAAGTTACAAAGCACCACTCAGCTGTCTTCCGGAAGAGGGGCGTCTTCCGAAACCAGGT  764
                                                                                 |||||
Sbjct 2685  ---------------------------------------------------------------------CAGGT  2689

Query  765  GGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGACATACTGTCTCCTAACA  838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2690  GGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTCTGTGACGACATACTGTCTCCTAACA  2763

Query  839  CAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTG  912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2764  CAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTG  2837

Query  913  GCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTGCTATTTCTGGGATACAGATTACCAGGA  986
            ||||||||||||||||||||||||||||||||||||||||||||||.|||.|||||||||||||||||||||||
Sbjct 2838  GCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTACTACTTCTGGGATACAGATTACCAGGA  2911

Query  987  GGGGCTCTGCAGCCTGAGTCAGGAAGGGGCCTCCGTGAAGATCATGGGCTACAAAGATTTTGTATCTTGTTGGA  1060
            |||||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||..||.|||||||.
Sbjct 2912  GGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAGATCATGGGCTACAAAGATTTTAAATATTGTTGGG  2985

Query 1061  AAAACTTTGTGTACAGTGATGATGAGCCATTCAAGCCTTGGAAGGGACTACAAACCAACTTTCGACTTCTGAAA  1134
            |||||||||||||||.|||||||||||||||||||||||||||.||||||.||..||||||||.|.|.|||.|.
Sbjct 2986  AAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTGGAAAGGACTAAAATACAACTTTCTATTCCTGGAC  3059

Query 1135  AGAAGGCTACGGGAGATTCTCCAG--------------------------------------------------  1158
            ||.|.|||.|.||||||||||.||                                                  
Sbjct 3060  AGCAAGCTGCAGGAGATTCTCGAGTGAGGGGTCTCCCCGGGCCTCATGGTCTGTCTCCTCTAGCCTCCTGCTCA  3133

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3134  TGTTGTGCAGGCCTCCCCTCCATCCTGGACCAGCTGTGCTTTTGCCTGGTCATCCTGAGCCCCTCCTGGCCTCA  3207

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3208  GGGCCATTCCATAGTGCTCCCCTGCCTCACCACCTCCTCTCCGCTCTCCCAGGCTCTTCCTGCAGAGGCCTCTT  3281

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3282  TCTGCCTCCATGGCTATCCATCCACCCACCAAGACCCTGTTCCCTGAGCCTGCATGCCCCTAACCTGCCTTTTC  3355

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3356  CCATCTCCCCAGCATAACCTAATATTTTTTTTTTTTTTTTGAGACGGAATTTCGCTCTGTCACCCAGACTGGAG  3429

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3430  TGCAATGGCTTGATCTTGGCTCACTGCAAACTCTGCCTACCAGGTTCAAGCGATTCTCCTGCCTCCGCCTCCCG  3503

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3504  AGTAGCTGGAATTACAGACGCCTGCCACCACGCACAGCTAACTTTTTTTTTTTTTGTATTTTTAGTAGTGACTG  3577

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3578  GGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTATCTCAGCCTCCCAAAGT  3651

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3652  GCTGGGATTACAGGCGTGAGCCACTGGCCCGGCGGCACAACCAAATCTTATTAAACTCACCCTAGGCTGGCCGC  3725

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3726  GGTGACTCATGCCTATAATCCCCCAGCAATTTGGGAGGCAGAGGTGAGAGAATCGCTTGAGCCCAGGAATTCGA  3799

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3800  GACCAGCCTGGGCCACATGACAAAGCCCCATCTCTACAAAAAAATTACAAAAAAAAAAAAAACAGGTGTGGTGG  3873

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3874  CATGCACCTGTAGTTGAAGCTACTTGGAAGGATGAAGTGGGAGGATTGCTTGAGCCGGGGAGGTGGAGGCTGCA  3947

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 3948  GTGAACTGAGATCACGTCACTGAACTCCAGTCTGAGCAACAGATCGAGACCCTGCCTGAAAATAAATCAATAAA  4021

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 4022  TAAACTCAACCGAAATGGGTATGAAAGTTGAAATGGGTATGTAAGTTGAAAACCAGAAGTTTTGAGAAACATCC  4095

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 4096  TTTGTTAACTTTCATCCTACAAATTGGGTCATTCATGTCCTACGCAGCTAAAACAGAGCCCAGGAGCCAGGGAG  4169

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 4170  GAAAAGCAGTCAGGCCACACACCATTGCTCCCAAAATGGACTTCTCTGCAAGCCTGACTCCTGAAACTGTGCAT  4243

Query 1159  ----------------------------------------------------------  1158
                                                                      
Sbjct 4244  TGTACCCTGAAACCAGCTTTATCCATAGCTTCTGCAATAAATGGCTGTAAGTCTTGGA  4301

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