Nucleotide Global Alignment

Description

• Query: ccsbBroad304_09121
• Subject: NM_179203.3
• Aligned Length: 1953
• Identities: 1470
• Gaps: 189

Alignment

Query    1  ATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGC  74
            ||||||||||||||||||   |.|||||||||||||||.||||||.|.|||||.||||.|||.|||||||||||
Sbjct    1  ATGTCGTGGCTCTTCGGC---ATCAAGGGCCCCAAGGGCGAAGGCACAGGGCCTCCGCTGCCCTTGCCGCCCGC  71

Query   75  GCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACT  148
            .||.||||||||.|||||||||||.||||||||...||||||||||||..||||||||||||||||||||||||
Sbjct   72  TCAACCCGGGGCGGAGGGCGGCGGTGACCGCGGGGCGGGAGACCGGCCATCGCCCAAGGACAAATGGAGCAACT  145

Query  149  TCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCC  222
            |||||||.||.||||||||.||.||.|||||.|||||.||||||.|||||||||||||..|.|||||||||||.
Sbjct  146  TCGACCCGACGGGCCTGGAACGTGCGGCCAAAGCGGCTCGCGAGTTGGAGCACTCGCGCCATGCCAAGGAGGCA  219

Query  223  CTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAGGCCGC  296
            ||||.|||.||.||||||||||||||||||||||||.||||.||.||||||||||||||.|||||.||.||.||
Sbjct  220  CTGAGTCTCGCACAGATGCAGGAGCAGACGCTGCAGCTGGAACAGCAGTCCAAGCTCAAGGAGTACGAAGCTGC  293

Query  297  CGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCC  370
            |||.||||||||.||||||||.||||||||.|.|||.||.|||||.||.|||||.|||||||..||.|||||.|
Sbjct  294  CGTAGAGCAGCTGAAGAGCGAACAGATCCGTGTGCAAGCCGAGGAAAGAAGGAAAACCCTGACTGAAGAGACAC  367

Query  371  GGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAG  444
            |.|||||||||||.|||||||||||.||.||.|||||.||.||.||||||||.||||||||.|||||.||.|||
Sbjct  368  GACAGCACCAGGCTAGGGCCCAGTACCAGGATAAGCTCGCTCGACAGCGCTATGAGGACCAGCTGAAACAACAG  441

Query  445  CGACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCAC  518
            |.||||||.|||||.|||||||||.||||.||.||||||||.||||||||||||||.|||||.|||||||||||
Sbjct  442  CAACTTCTGAATGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGCCAC  515

Query  519  CGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCA  592
            .||||||||.||||||||||||.||||.||.||.||||||.||||.|||||..|.||.|||||.||.||.||||
Sbjct  516  TGTGGAGCGCGAGATGGAGCTGAGGCATAAAAACGAGATGTTGCGGGTGGAAGCTGAAGCCCGAGCACGGGCCA  589

Query  593  AGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTC  666
            ||||.||.||.|||||||||||.||||||||.||.|||||.||.||.|||||..|.||||||||.||||||.||
Sbjct  590  AGGCTGATCGAGAGAATGCAGATATCATCCGGGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATC  663

Query  667  TTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGT  740
            ||||||||.||||||||.||||||||||||.||||.||||||||||||||.||||||||||||.||||||||||
Sbjct  664  TTGGAGTCTATCAGGACAGCTGGCACCTTGCTTGGTGAAGGATTCCGTGCATTTGTGACAGACTGGGACAAAGT  737

Query  741  GACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTG  814
            ||||||.||||||||||||.||||.||..|.|||||.||.|||||.||.||.||||||||.||..|.||..|||
Sbjct  738  GACAGCTACGGTGGCTGGGTTGACACTATTAGCTGTTGGAGTCTATTCTGCAAAGAATGCTACTTCTGTTGCTG  811

Query  815  GCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCG  888
            |.||.|..||.|||||.||..||||.|||||||||.|.|||||.|||||.|||||.|||.|.|||||.|||||.
Sbjct  812  GTCGGTATATTGAGGCCCGATTGGGAAAGCCGTCCTTGGTGAGAGAGACCTCCCGAATCTCAGTGCTAGAGGCA  885

Query  889  CTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGC--TGGAGGGTGTTGTGCTT  960
            .||.||||.|||||||||||||||.||||.||..||||..||||||||||  |||  |||||||.||..|.||.
Sbjct  886  TTGAGGCATCCCATCCAGGTCAGCAGGCGACTGGTCAGCAGACCCCAGGA--TGCATTGGAGGGCGTCATCCTC  957

Query  961  AGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTA  1034
            |||||.||||||||.||||||||.||.||.||.|||||.|||||.||.||.||||||||||||....|||||||
Sbjct  958  AGTCCTAGCCTGGAGGCACGGGTCCGAGATATTGCCATCGCAACAAGAAATACCAAGAAGAACAAAAGCCTGTA  1031

Query 1035  CAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAG  1108
            .|||.||.|.|||.||||||||||.||.||.||.||.|||||.||.||||||||||||||.||.|||||.||||
Sbjct 1032  TAGGAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGCATTCAG  1105

Query 1109  GCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAG  1182
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||||||
Sbjct 1106  GCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCAATGGGGCGGGAGGGTGTGACTGCCATGCACAAG  1179

Query 1183  CTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAA  1256
            .||||.||||||||.|..||||||||.||.||||||||||||||..||||||||||||||||||||||..||||
Sbjct 1180  GTCTTCGACTGGGCAAGCACCAGCCGACGAGGCCTCCTGCTCTTTGTGGATGAAGCAGACGCCTTCCTCAGGAA  1253

Query 1257  GCGAGCCACTGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATG---GGCCAAC  1327
            .|||||.|||||..|||||||..|.||||||||.||.||.|||||.||||||||   .||||.|   ||.||.|
Sbjct 1254  ACGAGCGACTGAAAAGATAAGTGAAGACCTCAGGGCTACTCTGAATGCCTTCCT---ACACAGGACAGGACAGC  1324

Query 1328  ACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATT  1401
            ||||.|..||.||||||||||||||||||||.||.|.||||||||||||.||.||.||.|||||...|||||||
Sbjct 1325  ACAGTAGTAAGTTCATGCTGGTCCTGGCCAGTAACCAGCCTGAGCAGTTTGATTGGGCTATCAATGACCGCATT  1398

Query 1402  GACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTG  1475
            ||||.|||||||..|||.|.||||||.||||.|||||||||.|||||||||||||||.||.||||||||||.|.
Sbjct 1399  GACGAGATGGTCTGCTTTGCCCTGCCACAGCGGGAGGAGCGAGAGCGCCTGGTGAGAATGTATTTTGACAAGTA  1472

Query 1476  TGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGG  1549
            |||.|||||||||||||||||||||||.|.||||.|||||.||||||||||||||||.||.|.|||.|||||.|
Sbjct 1473  TGTCCTTAAGCCGGCCACAGAAGGAAAGCAGCGCTTGAAGGTGGCCCAGTTTGACTATGGAAAGAAATGCTCAG  1546

Query 1550  AGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCA  1623
            ||||.||.|.|||.||||||||.|||||.|||||||||||.||||||||.||.|||.|.||||||||||.||||
Sbjct 1547  AGGTTGCCCAGCTAACGGAGGGGATGTCAGGCCGGGAGATTGCTCAGCTTGCTGTGGCGTGGCAGGCCATGGCA  1620

Query 1624  TATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACCG  1697
            |||.|.||..||||.||.||||||||.||.||.||||||||.|||.|||||||.||||||||.||||||.|||.
Sbjct 1621  TATTCATCTGAGGATGGAGTCCTCACGGAAGCTATGATGGATGCCCGTGTGCAGGATGCTGTGCAGCAGCACCA  1694

Query 1698  ACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCAAGGCG  1771
            .||||||||||..|||||.||.|..|||.|                    ||||        ||.||     |.
Sbjct 1695  GCAGAAGATGCAGTGGCTTAAAGTAGAGAG--------------------ACCC--------GATTC-----CC  1735

Query 1772  AGACCCTCACCTCATGGAGCCTGGCCACGGACCC----CTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAG  1841
            |||||..||        ||||  |||||  |.||    ||||| |..||||                       
Sbjct 1736  AGACCAACA--------AGCC--GCCAC--ATCCTTCACTCCT-CAGCTGC-----------------------  1773

Query 1842  GATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGC  1915
                                                                                      
Sbjct 1774  --------------------------------------------------------------------------  1773

Query 1916  CGTTCTGCCCCCCAGGGCACCCCCTGTTG  1944
                                         
Sbjct 1774  -----------------------------  1773