Construct: ORF TRCN0000465293
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005753.1_s317c1
- Derived from:
- ccsbBroadEn_09174
- DNA Barcode:
- CCTCGATACTTAAATCTGTCCCAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C2orf88 (84281)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465293
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_001042519.2 | 99.6% | 98.9% | 167C>T |
| 2 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_001042520.1 | 99.6% | 98.9% | 167C>T |
| 3 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_001042521.2 | 99.6% | 98.9% | 167C>T |
| 4 | human | 84281 | C2orf88 | chromosome 2 open reading f... | NM_032321.3 | 99.6% | 98.9% | 167C>T |
| 5 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_005246905.1 | 99.6% | 98.9% | 167C>T |
| 6 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_006712795.3 | 99.6% | 98.9% | 167C>T |
| 7 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511982.1 | 99.6% | 98.9% | 167C>T |
| 8 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511983.1 | 99.6% | 98.9% | 167C>T |
| 9 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511984.3 | 99.6% | 98.9% | 167C>T |
| 10 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511985.3 | 99.6% | 98.9% | 167C>T |
| 11 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_011511986.2 | 99.6% | 98.9% | 167C>T |
| 12 | human | 84281 | C2orf88 | chromosome 2 open reading f... | XM_017005096.1 | 99.6% | 98.9% | 167C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 375
- ORF length:
- 285
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGGCTGCAT GAAATCAAAG CAAACTTTCC 121 CATTTCCTAC CATATATGAA GGTGAGAAGC AGCATGAGAG TGAAGAACCC TTTATGCCAG 181 AAGAGAGATG TCTACCTAGG ATGGCTTCTC CAGTTAATGT CAAAGAGGAA GTGAAGGAAC 241 CTCCAGGGAC CAATATTGTG ATCTTGGAAT ATGCACACCG CCTGTCTCAG GATATCTTGT 301 GTGATGCCTT GCAGCAATGG GCATGCAATA ACATCAAGTA CCATGACATT CCATACATTG 361 AGAGTGAGGG GCCTTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 421 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 481 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CCTCGATACT TAAATCTGTC 541 CCAAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt