Construct: ORF TRCN0000465344

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002496.1_s317c1
Derived from:
ccsbBroadEn_03230
DNA Barcode:
GCCTTGGGAGACATTCGGCGACTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JPT1 (51155)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465344
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51155 JPT1 Jupiter microtubule associa... NM_016185.4 100% 100%
2 human 51155 JPT1 Jupiter microtubule associa... NM_001002032.3 78.8% 57.8% 296_297insGGGAGAAGGTGATATTCAT;444_543del
3 human 51155 JPT1 Jupiter microtubule associa... NM_001288611.2 76.3% 68.3% 317_320delGTAA;360_361ins106
4 human 51155 JPT1 Jupiter microtubule associa... NM_001002033.3 70.1% 70.1% 0_1ins138
5 human 51155 JPT1 Jupiter microtubule associa... NM_001288609.1 70.1% 70.1% 0_1ins138
6 human 51155 JPT1 Jupiter microtubule associa... NM_001288610.1 70.1% 70.1% 0_1ins138
7 human 51155 JPT1 Jupiter microtubule associa... XM_024450779.1 70.1% 70.1% 0_1ins138
8 human 51155 JPT1 Jupiter microtubule associa... NR_109933.2 31.4% 1_115del;411_446del;614_1470del
9 mouse 15374 Jpt1 Jupiter microtubule associa... NM_008258.1 88% 90.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
528
ORF length:
462
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac cacaaccacc accttcaagg gagtcgaccc caacagcagg aatagctccc
121gagttttgcg gcctccaggt ggtggatcca atttttcatt aggttttgat gaaccaacag
181aacaacctgt gaggaagaac aaaatggcct ctaatatctt tgggacacct gaagaaaatc
241aagcttcttg ggccaagtca gcaggtgcca agtctagtgg tggcagggaa gacttGGAGT
301CATCTGGACT GCAGAGAAGG AACTCCTCTG AAGCAAGCTC CGGAGACTTC TTAGATCTGA
361AGGGAGAAGG TGATATTCAT GAAAATGTGG ACACAGACTT GCCAGGCAGC CTGGGGCAGA
421GTGAAGAGAA GCCCGTGCCT GCTGCGCCTG TGCCCAGCCC GGTGGCCCCG GCCCCAGTGC
481CATCCAGAAG AAATCCCCCT GGCGGCAAGT CCAGCCTCGT CTTGGGTTAC CCAACTTTCT
541TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
601CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
661GTGGAAAGGA CGAGCCTTGG GAGACATTCG GCGACTCACG CGTTAAGTCg acaatcaacc
721tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)