Transcript: Human NM_001002032.3

Homo sapiens Jupiter microtubule associated homolog 1 (JPT1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
JPT1 (51155)
Length:
1415
CDS:
116..661

Additional Resources:

NCBI RefSeq record:
NM_001002032.3
NBCI Gene record:
JPT1 (51155)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001002032.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000139039 CCTCAACTGGACAGACCATAA pLKO.1 896 3UTR 100% 10.800 15.120 N JPT1 n/a
2 TRCN0000140622 GAGCCTGACTGTACATCTCTT pLKO.1 625 CDS 100% 4.950 6.930 N JPT1 n/a
3 TRCN0000343581 GAGCCTGACTGTACATCTCTT pLKO_005 625 CDS 100% 4.950 6.930 N JPT1 n/a
4 TRCN0000122607 GCAGGAATAGCTCCCGAGTTT pLKO.1 156 CDS 100% 4.950 6.930 N JPT1 n/a
5 TRCN0000143748 CCAGATGTGTTAGAGGATCTT pLKO.1 835 3UTR 100% 4.950 3.465 N JPT1 n/a
6 TRCN0000122437 GCAGGGAAGACTTGGAGTCAT pLKO.1 333 CDS 100% 4.950 3.465 N JPT1 n/a
7 TRCN0000144337 CAAAGCAAAGAAACTGCCTTT pLKO.1 1076 3UTR 100% 4.050 2.835 N JPT1 n/a
8 TRCN0000122304 CAGAACAACCTGTGAGGAAGA pLKO.1 228 CDS 100% 4.050 2.835 N JPT1 n/a
9 TRCN0000343637 CAGAACAACCTGTGAGGAAGA pLKO_005 228 CDS 100% 4.050 2.835 N JPT1 n/a
10 TRCN0000140351 GTTAGCTCTGACTGTCCTGAA pLKO.1 557 CDS 100% 4.050 2.835 N JPT1 n/a
11 TRCN0000343638 GTTAGCTCTGACTGTCCTGAA pLKO_005 557 CDS 100% 4.050 2.835 N JPT1 n/a
12 TRCN0000139175 CAACAGAACAACCTGTGAGGA pLKO.1 225 CDS 100% 2.640 1.848 N JPT1 n/a
13 TRCN0000139320 CGTTCTGTCTGTTTCCTCCAT pLKO.1 584 CDS 100% 2.640 1.848 N JPT1 n/a
14 TRCN0000343639 CGTTCTGTCTGTTTCCTCCAT pLKO_005 584 CDS 100% 2.640 1.848 N JPT1 n/a
15 TRCN0000139615 CCATGCTTGTGAACTGCACAA pLKO.1 601 CDS 100% 0.405 0.284 N JPT1 n/a
16 TRCN0000343641 CCATGCTTGTGAACTGCACAA pLKO_005 601 CDS 100% 0.405 0.284 N JPT1 n/a
17 TRCN0000144649 GACTGTACATCTCTTGGATTT pLKO.1 631 CDS 100% 10.800 6.480 N JPT1 n/a
18 TRCN0000140841 CAGAGAAGGAACTCCTCTGAA pLKO.1 362 CDS 100% 0.495 0.297 N JPT1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001002032.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03230 pDONR223 100% 78.8% 57.8% None 296_297insGGGAGAAGGTGATATTCAT;444_543del n/a
2 ccsbBroad304_03230 pLX_304 0% 78.8% 57.8% V5 296_297insGGGAGAAGGTGATATTCAT;444_543del n/a
3 TRCN0000465344 GCCTTGGGAGACATTCGGCGACTC pLX_317 50.4% 78.8% 57.8% V5 296_297insGGGAGAAGGTGATATTCAT;444_543del n/a
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