Construct: ORF TRCN0000465352

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017485.1_s317c1
Derived from:
ccsbBroadEn_12786
DNA Barcode:
GATGGCAATATAAGTGATGTTCTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GTF2IRD2 (84163)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465352
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 389524 GTF2IRD2B GTF2I repeat domain contain... NM_001003795.3 49.4% 44.1% (many diffs)
2 human 84163 GTF2IRD2 GTF2I repeat domain contain... NM_173537.4 49.3% 44.1% (many diffs)
3 human 389524 GTF2IRD2B GTF2I repeat domain contain... NM_001368302.1 42.2% 37.8% (many diffs)
4 human 84163 GTF2IRD2 GTF2I repeat domain contain... NM_001368300.1 42.2% 37.8% (many diffs)
5 human 84163 GTF2IRD2 GTF2I repeat domain contain... NM_001281447.1 19.8% 16.8% (many diffs)
6 human 389524 GTF2IRD2B GTF2I repeat domain contain... NM_001368301.1 19.8% 16.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1560
ORF length:
1494
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ccaggtagca gtgtccaccc tgcctgttga agaagagtcc tcctcagaga
121ccaggatggt ggtgacattc ctcgtgtctg ccctcgaatc catgtgtaaa gaactggcca
181agtccaaggc agaagtggcc tgcatcgcag tgtacgaaac agacgtgttt gtcgtcggaa
241ccgagagagg atgcgctttt gttaatgcca ggacggattt tcagaaagat tttgcaaaat
301actgcgttgc agagggactg tgtgaggtga aacctccctg ccctgtgaac gggatgcagg
361tccactcggg cgaaacggaa atactcagga aggcagtgga ggactatttc tgcttttgtt
421atggtaaagc cttagggaca acagtgatgg tgcctgttcc ctatgagaag atgctgcgag
481accagtcggc tgtggtagtg caggggcttc cggaaggcgt tgcctttcaa caccctgaga
541attacgacct tgcaaccctg aaatggattt tggagaacaa agcagggatt tcattcatca
601taaatagacc cttcctagga ccagagagtc agctgggtgg ccctgggatg gtaacagatg
661cggagagatc catagtatca ccaagtgaaa gctgcggccc catcaatgtg aaaactgaac
721ccatggaaga ttctggcatt tcactgaaag cagaagctgt ctcagtcaag aaagaatcag
781aagatcctaa ttactatcaa tataatatgc aaggaagcca cccttcttcc acaagcaatg
841aagtaataga aatggaatta ccaatggaag attccactcc gctggtccct tcagaagaac
901caaatgagga ccctgaagcc gaggtgaaaa tcgaaggaaa cacaaattca tccagtgtta
961caaattctgc agcaggtgtt gaagatctta acatcgttca agtgactgtt ccagataatg
1021agaaggaaag attatcaagc attgaaaaga ttaaacagct aagagaacaa gttaatgacc
1081tctttagccg aaaatttggt gaagcaattg gcgtggattt ccctgtgaaa gttccctaca
1141ggaagatcac attcaaccct ggctgtgtgg tgattgatgg catgcccccg ggggtggtat
1201tcaaggcccc cggctatctg gaaatcagtt ccatgaggag gatcttGGAG GCAGCTGAGT
1261TTATCAAATT CACAGTCATC AGGCCGCTTC CAGGGCTTGA GCTCAGTAAT GGACTTTTGG
1321AGGCCGGGGC AGGAGGATTG CTTGAGGCCG GGAGTTTGAG GCCAGCCTGG GCAACATGGC
1381AAGACCCCAT CTCTACAAAA AATTTAAAAA TTAGCTGGAA ACAGTGGCTC ACACCTGTAG
1441CCCCAGCTAC TTGGCAGGCT GAAGCGGGAG GATCGCTTGA ACTCAGGAGT TTGAGACAGC
1501AGAGAACCAT AATTGCAATA CTGCACTCCA GCCTGGGTGA CAGAACAAGA CCCTGTCTCT
1561ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1621GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1681TTTATATATC TTGTGGAAAG GACGAGATGG CAATATAAGT GATGTTCTCA CGCGTTAAGT
1741Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)

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