Construct: ORF TRCN0000465512
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017652.1_s317c1
- Derived from:
- ccsbBroadEn_09131
- DNA Barcode:
- TACGGGCCCGTGCACATTAAAAAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KRTAP9-2 (83899)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465512
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83899 | KRTAP9-2 | keratin associated protein 9-2 | NM_031961.3 | 99.2% | 98.8% | (many diffs) |
| 2 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_001318227.1 | 96.9% | 95.4% | (many diffs) |
| 3 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | XM_003846481.1 | 94.4% | 89.6% | (many diffs) |
| 4 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_030975.2 | 94.2% | 92.5% | (many diffs) |
| 5 | human | 100505724 | KRTAP9-7 | keratin associated protein 9-7 | NM_001277332.1 | 92.9% | 89% | (many diffs) |
| 6 | human | 83901 | KRTAP9-8 | keratin associated protein 9-8 | NM_031963.3 | 89.4% | 87.9% | (many diffs) |
| 7 | human | 83900 | KRTAP9-3 | keratin associated protein 9-3 | NM_031962.3 | 87.7% | 86.2% | (many diffs) |
| 8 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | NM_001277331.1 | 87.5% | 83.3% | (many diffs) |
| 9 | human | 85280 | KRTAP9-4 | keratin associated protein 9-4 | NM_033191.3 | 86.7% | 85% | (many diffs) |
| 10 | human | 728318 | KRTAP9-1 | keratin associated protein 9-1 | NM_001190460.1 | 63.5% | 57.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 591
- ORF length:
- 522
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gacccactgt tgctcccctt gctgtcagcc tacatgctgc aggaccacct 121 gctgcaggac cacctgctgg aagcccacca ctgtgaccac ctgcagcagc acatcctgct 181 gccagcccgc cTGCTGTGTG TCCAGCTGCT GCCAGCCTTG CTGCCGCCCA ACTTCCTGTC 241 AAAACACCTG CTGTAGGACC ACCTGCTGCC AGCCCACCTG TGTGACCAGC TGCTGCCAGC 301 CTTCCTGCTG CAGCACACCC TGCTGCCAGC CCACCTGCTG TGGGTCCAGC TGCTGTGGCC 361 AAACCAGCTG TGGGTCCAGC TGTGGCCAGA GCAGCTCCTG TGCACCTGTG TACTGCAGAA 421 GAACCTGCTA CTACCCCACG ACTGTCTGCC TGCCTGGTTG CCTAAACCAG AGCTGTGGCT 481 CCAACTGCTG CCAGCCGTGC TGCCGCCCAG CCTGCTGTGA GACCACCTGC TGCAGGACCA 541 CTTGCTTCCA GCCCACCTGT GTGTCCAGCT GCTGCCAGCC TTCTTGCTGC TTGCCAACTT 601 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 661 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 721 CTTGTGGAAA GGACGATACG GGCCCGTGCA CATTAAAAAG ACGCGTTAAG TCgacaatca 781 acctctggat tacaaaattt gtgaaagatt