Construct: ORF TRCN0000465517

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008829.1_s317c1
Derived from:
ccsbBroadEn_13764
DNA Barcode:
GTTGCCGATGGCTGCTATGAGATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465517
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 107986856 LOC107986856 uncharacterized LOC107986856 XR_001745398.2 14.9% (many diffs)
2 human 101927274 LINC02071 long intergenic non-protein... NR_110751.1 10.8% (many diffs)
3 human 107984703 LOC107984703 uncharacterized LOC107984703 NR_148060.1 9.7% (many diffs)
4 human 101929165 LOC101929165 uncharacterized LOC101929165 NR_134476.1 8.3% (many diffs)
5 human 664618 HSP90AB4P heat shock protein 90 alpha... NR_073415.2 5.9% (many diffs)
6 human 105372703 LOC105372703 uncharacterized LOC105372703 XR_001754696.1 3.1% (many diffs)
7 human 112268222 LOC112268222 uncharacterized LOC112268222 XR_002958280.1 3% (many diffs)
8 human 783 CACNB2 calcium voltage-gated chann... XR_001747198.1 2.2% (many diffs)
9 human 54892 NCAPG2 non-SMC condensin II comple... NR_104054.2 1.8% (many diffs)
10 human 57404 CYP20A1 cytochrome P450 family 20 s... NR_163983.1 1.8% (many diffs)
11 human 57404 CYP20A1 cytochrome P450 family 20 s... NR_163984.1 1.8% (many diffs)
12 human 57404 CYP20A1 cytochrome P450 family 20 s... NR_163982.1 1.8% (many diffs)
13 human 57404 CYP20A1 cytochrome P450 family 20 s... NR_163981.1 1.7% (many diffs)
14 human 57404 CYP20A1 cytochrome P450 family 20 s... NR_163985.1 1.7% (many diffs)
15 human 6391 SDHC succinate dehydrogenase com... NR_103459.2 1.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
285
ORF length:
219
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc tgtaaTCCTA GCACTTTGGG AGGCCGAGGC AGGCAGATTG CCTGAACTCA
121GGAGTTCAAG ACCAGCCTGG ACAACACGGC GAAACCCCGT CTCTACTAAA ATTCAAAAAA
181TTAGCCAGGC ATGGCAACGT GTACCTGTAA TCCCAGCTAC TAGGGAGGCT GAGGCAGGAA
241AATTGCTTGA ACCGCTCAGA CAGAGCAAGA CTCCGTCTTT AAAATACCCA ACTTTCTTGT
301ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
361AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
421GAAAGGACGA GTTGCCGATG GCTGCTATGA GATTACGCGT TAAGTCgaca atcaacctct
481ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)