Transcript: Human NR_104054.2

Homo sapiens non-SMC condensin II complex subunit G2 (NCAPG2), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
NCAPG2 (54892)
Length:
4355
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104054.2
NBCI Gene record:
NCAPG2 (54892)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104054.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000322738 ATGATCCACGGGACCATTAAA pLKO_005 998 3UTR 100% 15.000 21.000 N NCAPG2 n/a
2 TRCN0000322800 TGCCTAGTGCCTGCGTAAATA pLKO_005 4039 3UTR 100% 15.000 21.000 N NCAPG2 n/a
3 TRCN0000148709 CCTCGGAAGAAACTTAACCAT pLKO.1 2672 3UTR 100% 3.000 4.200 N NCAPG2 n/a
4 TRCN0000322735 CCTCGGAAGAAACTTAACCAT pLKO_005 2672 3UTR 100% 3.000 4.200 N NCAPG2 n/a
5 TRCN0000129629 CATAGGGTCATTTATCAGCAA pLKO.1 2948 3UTR 100% 2.640 3.696 N NCAPG2 n/a
6 TRCN0000322737 GCATATTATCCTGGTTATTAA pLKO_005 3681 3UTR 100% 15.000 10.500 N NCAPG2 n/a
7 TRCN0000128587 GCAAAGCTGATTCACGTTATT pLKO.1 2033 3UTR 100% 13.200 9.240 N NCAPG2 n/a
8 TRCN0000146589 CCTGGTTATTAATGCAGGTAA pLKO.1 3690 3UTR 100% 4.950 3.465 N NCAPG2 n/a
9 TRCN0000128629 CATGAGTTCATTACTGCTGTT pLKO.1 3388 3UTR 100% 4.050 2.835 N NCAPG2 n/a
10 TRCN0000322736 CATGAGTTCATTACTGCTGTT pLKO_005 3388 3UTR 100% 4.050 2.835 N NCAPG2 n/a
11 TRCN0000191969 GCTGCATTGTTGTTTGTTGAA pLKO.1 1322 3UTR 100% 4.950 2.970 N Ncapg2 n/a
12 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4258 3UTR 100% 4.950 2.475 Y ERAP2 n/a
13 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 4301 3UTR 100% 4.050 2.025 Y P3H4 n/a
14 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 4301 3UTR 100% 4.050 2.025 Y ORAI2 n/a
15 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 4301 3UTR 100% 4.050 2.025 Y P3H4 n/a
16 TRCN0000201746 GCCAGGAGGTTCTATCAGTAT pLKO.1 1982 3UTR 100% 4.950 3.465 N Ncapg2 n/a
17 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4259 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104054.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13764 pDONR223 100% 1.8% None (many diffs) n/a
2 ccsbBroad304_13764 pLX_304 0% 1.8% V5 (many diffs) n/a
3 TRCN0000465517 GTTGCCGATGGCTGCTATGAGATT pLX_317 92% 1.8% V5 (many diffs) n/a
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