Construct: ORF TRCN0000465574
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014265.1_s317c1
- Derived from:
- ccsbBroadEn_14323
- DNA Barcode:
- CAACATATCGTGCACATGACTGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC183 (84960)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465574
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84960 | CCDC183 | coiled-coil domain containi... | NM_001039374.5 | 10.2% | 7.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 378
- ORF length:
- 288
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGTGTCCAG GACCGAGGAG GGCGACACAA 121 AGGTGAGGGA CACCCTGGAG TCCTCGACTC TGATGGAGAA GTACAACACC AGGATCAGCT 181 TTGAGAACCG GGAGGAGGAT ATGATCGGAC TGCTGCGGAC GCTGGGGCGA CCGGGGTCTC 241 GGAGAGGAGC ACGGGACACG CAGGATCGGG GGAGGTTCTG CGTAAGGAGG CAGCCCGGGC 301 CCGGAACTGC GCGCCAGAAC CGCGTGCGCA TGCGCCGACC GCGCGCGCCG CGCCCCCGCG 361 GCCCTCGCGG CGCCCCGTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 421 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 481 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACAACATA TCGTGCACAT 541 GACTGCCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt