Construct: ORF TRCN0000465626

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012262.1_s317c1
Derived from:
ccsbBroadEn_07000
DNA Barcode:
CTGGGTGGGATTCAGCACTTATCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RO60 (6738)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465626
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6738 RO60 Ro60, Y RNA binding protein NM_001173524.2 99.9% 100% 15A>G
2 human 6738 RO60 Ro60, Y RNA binding protein NM_004600.5 99.9% 100% 15A>G
3 human 6738 RO60 Ro60, Y RNA binding protein XM_006711497.3 99.9% 100% 15A>G
4 human 6738 RO60 Ro60, Y RNA binding protein XM_017002181.2 99.9% 100% 15A>G
5 human 6738 RO60 Ro60, Y RNA binding protein XM_017002182.1 99.9% 100% 15A>G
6 human 6738 RO60 Ro60, Y RNA binding protein XM_024449332.1 99.9% 100% 15A>G
7 human 6738 RO60 Ro60, Y RNA binding protein NM_001042370.2 98.4% 97.9% (many diffs)
8 human 6738 RO60 Ro60, Y RNA binding protein NM_001042369.2 96.9% 95.1% (many diffs)
9 human 6738 RO60 Ro60, Y RNA binding protein XM_006711495.4 96% 95.8% 15A>G;581_646del
10 human 6738 RO60 Ro60, Y RNA binding protein XM_006711496.3 96% 95.8% 15A>G;581_646del
11 human 6738 RO60 Ro60, Y RNA binding protein XM_017002180.1 96% 95.8% 15A>G;581_646del
12 human 6738 RO60 Ro60, Y RNA binding protein NM_001173525.1 95.8% 95.5% (many diffs)
13 human 6738 RO60 Ro60, Y RNA binding protein NM_001331020.2 48.8% 48.8% 0_1ins825
14 human 6738 RO60 Ro60, Y RNA binding protein XM_011509922.2 48.8% 48.8% 0_1ins825
15 human 6738 RO60 Ro60, Y RNA binding protein XM_017002183.1 48.8% 48.8% 0_1ins825
16 mouse 20822 Trove2 TROVE domain family, member 2 NM_013835.2 85.3% 89.7% (many diffs)
17 mouse 20822 Trove2 TROVE domain family, member 2 XM_017319451.1 85.3% 89.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1680
ORF length:
1614
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ggaatctgtg aaccaaatgc agccactgaa tgagaagcag atagccaatt
121ctcaggatgg atatgtatgg caagtcactg acatgaatcg actacaccgg ttcttatgtt
181tcggttctga aggtgggact tattatatca aagaacagaa gttgggcctt gaaaatgctg
241aagctttaat tagattgatt gaagatggca gaggatgtga agtgatacaa gaaataaagt
301catttagtca agaaggcaga accacaaagc aagagcctat gctctttgca cttgccattt
361gttcccagtg ctccgacata agcacaaaac aagcagcatt taaagctgtt tctgaagttt
421gtcgcattcc tacccatctc tttactttta tccagtttaa gaaagatctg aaggaaagca
481tgaaatgtgg catgtggggt cgtgccctcc ggaaggctat agcggactgg tacaatgaga
541aaggtggcat ggcccttgct ctggcagtta caaaatataa acagagaaat ggctggtctc
601acaaagatct attaagattg tcacatctta aaccttccag tgaaggactt gcaattgtga
661ccaaatatat tacaaagggc tggaaagaag ttcatgaatt gtataaagaa aaagcactct
721ctgtggagac tgaaaaatta ttaaagtatc tggaggctgt agagaaagtg aagcgcacaa
781gagatgagct agaagtcatt catctaatag aagaacatag attagttaga gaacatcttt
841taacaaatca cttaaagtct aaagaggtat ggaaggcttt gttacaagaa atgccgctta
901ctgcattact aaggaatcta ggaaagatga ctgctaattc agtacttgaa ccaggaaatt
961cagaagtatc tttagtatgt gaaaaactgt gtaatgaaaa actattaaaa aaggctcgta
1021tacatccatt tcatattttg atcgcattag aaacttacaa gacaggtcat ggtctcagag
1081ggaaactgaa gtggcgccct gatgaagaaa ttttgaaagc attggatgct gctttttata
1141aaacatttaa gacagttgaa ccaactggaa aacgtttctt actagctgtt gatgtcagtg
1201cttctatgaa ccaaagagtt ttgggtagta tactcaacgc tagtacagtt gctgcagcaa
1261tgtgcatggt tgtcacacga acagaaaaag attcttatGT AGTTGCTTTT TCCGATGAAA
1321TGGTACCATG TCCAGTGACT ACAGATATGA CCTTACAACA GGTTTTAATG GCTATGAGTC
1381AGATCCCAGC AGGTGGAACT GATTGCTCTC TTCCAATGAT CTGGGCTCAG AAGACAAACA
1441CACCTGCTGA TGTCTTCATT GTATTCACTG ATAATGAGAC CTTTGCTGGA GGTGTCCATC
1501CTGCTATTGC TCTGAGGGAG TATCGAAAGA AAATGGATAT TCCAGCTAAA TTGATTGTTT
1561GTGGAATGAC ATCAAATGGT TTCACCATTG CAGACCCAGA TGATAGAGGC ATGTTGGATA
1621TGTGCGGCTT TGATACTGGA GCTCTGGATG TAATTCGAAA TTTCACATTA GATATGATTT
1681ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1741GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1801TTTATATATC TTGTGGAAAG GACGACTGGG TGGGATTCAG CACTTATCTA CGCGTTAAGT
1861Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)

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