Construct: ORF TRCN0000465632

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005828.1_s317c1
Derived from:
ccsbBroadEn_12496
DNA Barcode:
GATACCCTCCTCTGCCCGTTCCAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DDX31 (64794)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465632
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64794 DDX31 DEAD-box helicase 31 NM_001322342.1 99.9% 99.8% 1864A>G
2 human 64794 DDX31 DEAD-box helicase 31 NM_001322343.1 93.3% 93.2% 1_144del;2008A>G
3 human 64794 DDX31 DEAD-box helicase 31 NM_001322341.2 89.2% 89.1% 1_243del;2107A>G
4 human 64794 DDX31 DEAD-box helicase 31 XM_005272207.4 89.2% 89.1% 1_243del;2107A>G
5 human 64794 DDX31 DEAD-box helicase 31 NM_022779.8 79.1% 79% 1_531del;2395A>G
6 human 64794 DDX31 DEAD-box helicase 31 NM_001322340.1 70.5% 67% (many diffs)
7 human 64794 DDX31 DEAD-box helicase 31 XM_011518921.3 70.5% 70% (many diffs)
8 human 64794 DDX31 DEAD-box helicase 31 XM_006717236.4 60.3% 55.6% 1_531del;1946_1947ins194;2073_2074ins286
9 human 64794 DDX31 DEAD-box helicase 31 XM_011518922.3 60.3% 55.6% 1_531del;1946_1947ins194;2073_2074ins286
10 human 64794 DDX31 DEAD-box helicase 31 NM_138620.1 47.9% 47.9% 1_531del;1755_1756ins798
11 human 64794 DDX31 DEAD-box helicase 31 NR_136309.2 45.2% (many diffs)
12 human 64794 DDX31 DEAD-box helicase 31 XR_246600.5 43.6% (many diffs)
13 human 64794 DDX31 DEAD-box helicase 31 XR_929836.3 42.3% (many diffs)
14 human 64794 DDX31 DEAD-box helicase 31 XR_001746366.2 41.8% (many diffs)
15 human 64794 DDX31 DEAD-box helicase 31 NM_001322344.1 16.1% 15.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2088
ORF length:
2022
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ttctccaaag aagcattcgg ttagcacaag tgatagaaac caggaggaga
121gacagtgcat taagacttca tcactgttta aaaacaaccc tgacattcca gaactccaca
181gacctgtggt aaagcaggtg caagaaaaag tgtttacttc agctgctttt catgagctgg
241gcctccaccc acatttaatt tccacaataa atacggtctt aaaaatgtct agtatgacca
301gtgttcagaa gcaaagtatt cctgtgttgc tggaaggcag agatgctctc gtgagatccc
361agacgggctc aggtaaaact cttgcctatt gcatccctgt ggtccagtcc cttcaagcaa
421tggagtcaaa aatacagcgc agtgatggcc cctatgccct ggtgctcgtg ccaacgagag
481agctagctct acaaagcttt gacactgtcc agaaactgct taagcctttc acctggattg
541tgcctggagt gttaatggga ggagagaaga gaaaatcaga aaaggccaga ctccgcaaag
601gaataaatat ccttatctca actcctggac gcctggtgga tcatataaaa tccacaaaga
661acattcattt tagtcggctg cggtggttgg tgtttgatga agcagacaga atcttggatt
721tgggttttga aaaggacatc acagtgatac ttaatgctgt aaatgctgaa tgccaaaaac
781gacagaatgt cttgctatca gcgacactca cagaaggtgt aacgcggcta gctgatatca
841gtttgcatga tccagtcagt atttctgtcc tggacaagag ccatgaccag ttgaacccaa
901aggacaaagc ggtccaggag gtctgtcctc caccagctgg cgacaagctg gacagctttg
961caataccaga gagtctcaag cagcatgtga ctgtggttcc cagcaaactg aggcttgtct
1021gcctagcggc cttcatcctt cagaaatgca agtttgagga agaccagaag atggttgtct
1081ttttctcaag ttgcgagctg gtggagttcc actacagcct cttcctacag accctgctga
1141gcagctcagg ggcgccggca tcagggcagt tgccatctgc ctccatgcga ttaaaattcc
1201tacggctgca tggcggcatg gagcaggagg aaagaacagc agtgtttcag gaattttcac
1261attccagaag aggcgtcctt ctttgcacgg atgttgcagc tcggggctta gatctccctc
1321aagtcacgtg gattgttcag tacaacgctc catcttcacc tgcagaatac atccaccgga
1381ttggaagaac cgcccggatt ggctgccatg ggagcagcct gctcattttg gctccttcgg
1441aggcagaata tgtcaactcg ttggcttctc acaaaatcaa cgtttctgag attaagatgg
1501aagatatttt gtgtgttctg acaagagatg attgttttaa agggaaacga tggggagccc
1561agaaatccca tgctgttggc ccccaggaaa tccgagagcg agccacagtc ttgcagacgg
1621tatttgaaga ttacgtgcac tccagtgaga ggagggtctc ctgggcaaag aaagctctgc
1681agtccttcat ccaagcctac gccacctacc ccagggagct gaagcacaTC TTCCACGTCC
1741GATCCCTCCA CCTTGGGCAT GTGGCGAAGA GCTTCGGACT AAGAGATGCC CCCAGGAATC
1801TTAGTGCCTT GACTAGAAAG AAGAGGAAAG CACACGTGAA AAGGCCTGAC CTTCATAAGA
1861AGACCCAGAG TAAACACAGC CTCGCTGAAA TCCTACGTTC GGAATACTCA AGCGGCATGG
1921AGGCCGACGT CGCCAAGGTC AAAAAGCAAA ACGCACCTGG AGAGCCTGGT GGCCGGCCCC
1981TGCAGCACAG TCTGCAGCCG ACACCCTGCT TTGGCCGTGG GAAAACATTA AAATGGAGAA
2041AAACCCAAAA AGGTGTACAG CGGGACAGCA AGACTTCCCA GAAAGTTTAC CCAACTTTCT
2101TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
2161CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
2221GTGGAAAGGA CGAGATACCC TCCTCTGCCC GTTCCACACG CGTTAAGTCg acaatcaacc
2281tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)