Construct: ORF TRCN0000465701

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018310.1_s317c1
Derived from:
ccsbBroadEn_06351
DNA Barcode:
TCAATTTGCCATGGTTGCTACTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HARS1 (3035)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465701
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_002109.6 99.9% 99.8% 96G>T
2 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_001258041.2 96% 95.8% 96G>T;462_463ins60
3 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_001289094.1 94.1% 93.9% 1_1delAins88;9G>T
4 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_001258040.2 92% 91.9% 96G>T;177_178ins120
5 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_001258042.2 88.1% 88% 96G>T;177_178ins120;342_343ins60
6 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_001289092.1 85.3% 85.2% 96G>T;300_301ins222
7 human 3035 HARS1 histidyl-tRNA synthetase 1 NM_001289093.1 77.5% 77.4% 96G>T;180_181ins342
8 mouse 15115 Hars histidyl-tRNA synthetase NM_008214.4 88.2% 94.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1593
ORF length:
1527
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agagcgtgcg gcgctggagg agctggtgaa acttcaggga gagcgcgtgc
121gaggcctcaa gcagcagaag gccagcgccg agctgatcga tgaggaggtg gcgaaactcc
181tgaaactgaa ggcacagctg ggtcctgatg aaagcaaaca gaaatttgtg ctcaaaaccc
241ccaagggcac aagagactat agtccccggc agatggcagt tcgcgagaag gtgtttgacg
301taatcatccg ttgcttcaag cgccacggtg cagaagtcat tgatacacct gtatttgaac
361taaaggaaac actgatggga aagtatgggg aagactccaa gcttatctat gacctgaagg
421accagggcgg ggagctcctg tcccttcgct atgacctcac tgttcctttt gctcggtatt
481tggcaatgaa taaactgacc aacattaaac gctaccacat agcaaaggta tatcggcggg
541ataacccagc catgacccgt ggccgatacc gggaattcta ccagtgtgat tttgacattg
601ctgggaactt tgatcccatg atccctgatg cagagtgcct gaagatcatg tgcgagatcc
661tgagttcact tcagataggc gacttcctgg tcaaggtaaa cgatcgacgc attctagatg
721ggatgtttgc tatctgtggt gtttctgaca gcaagttccg taccatctgc tcctcagtag
781acaagctgga caaggtgtcc tgggaagagg tgaagaatga gatggtggga gagaagggcc
841ttgcacctga ggtggctgac cgcattgggg actatgtcca gcaacatggt ggggtatccc
901tggtggaaca gctgctccag gatcctaaac tatcccaaaa caagcaggcc ttggagggcc
961tgggagacct gaagttgctc tttgagtacc tgaccctatt tggcattgat gacaaaatct
1021cctttgacct gagccttgct cgagggctgg attactacac tggggtgatc tatgaggcag
1081tgctgctaca gaccccagcc caggcagggg aagagcccct gggtgtgggc agtgtggctg
1141ctggaggacg ctatgatggg ctagtgggca tgttcgaccc caaagggcgc aaggtgccat
1201gtgtggggct cagcattgGG GTGGAGCGGA TTTTCTCCAT CGTGGAACAG AGACTAGAGG
1261CTTTGGAGGA GAAGATACGG ACCACGGAGA CACAGGTGCT TGTGGCATCT GCACAGAAGA
1321AGCTGCTAGA GGAAAGACTA AAGCTTGTCT CAGAACTGTG GGATGCTGGG ATCAAGGCTG
1381AGCTGCTGTA CAAGAAGAAC CCAAAGCTAC TGAACCAGTT ACAGTACTGT GAGGAGGCAG
1441GCATCCCACT GGTGGCTATC ATCGGCGAGC AGGAACTCAA GGATGGGGTC ATCAAGCTCC
1501GTTCAGTGAC GAGCAGGGAA GAGGTGGATG TCCGAAGAGA AGACCTTGTG GAGGAAATCA
1561AAAGGAGAAC AGGCCAGCCC CTCTGCATCT GCTGCCCAAC TTTCTTGTAC AAAGTGGTTG
1621ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1681GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATC
1741AATTTGCCAT GGTTGCTACT TTACGCGTTA AGTCgacaat caacctctgg attacaaaat
1801ttgtgaaaga tt

Download FASTA (ORF) (Full)