Construct: ORF TRCN0000465708

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017901.1_s317c1
Derived from:
ccsbBroadEn_10274
DNA Barcode:
ACATTACCATATTGCCCGAATTGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBRG1 (84897)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465708
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84897 TBRG1 transforming growth factor ... NM_032811.3 33.8% 31.4% 1_63del;453_589del;618_1233del
2 human 84897 TBRG1 transforming growth factor ... XM_017018442.2 15.8% 3.6% 0_1ins253;165_780del
3 human 84897 TBRG1 transforming growth factor ... NR_016021.2 8.3% 1_283del;701_5007del
4 human 84897 TBRG1 transforming growth factor ... XR_428983.4 8% 1_287del;677_872del;901_5205del
5 human 84897 TBRG1 transforming growth factor ... XR_001748012.2 7.7% (many diffs)
6 human 84897 TBRG1 transforming growth factor ... XR_001748011.2 7.6% (many diffs)
7 mouse 21376 Tbrg1 transforming growth factor ... NM_025289.3 30% 27.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
486
ORF length:
417
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaaaaagctc ccgaagaaga gccagaatga gaagtaccgg ctgaagtacc
121TGCGGCTGCG CAAAGCGGCC AAGGCCACGG TGTTTGAAAA TGCTGCTATT TGTGATGAAA
181TTGCTCGTCT TGAGGAAAAA TTTCTTAAAG CAAAAGAAGA AAGAAGGTAC TTGCTAAAGA
241AGCTCCTCCA GCTTCAGGCT CTAACTGAAG GGGAAGTACA GGCTGCAGCT CCTTCCCACA
301GTTCCAGTTT GCCCCTGACT TATGGTGTGG CCAGCTCTGT GGGAACTATA CAGGGAGCTG
361GGCCTATTTC AGGGCCCAGC ACTGGGGCTG AGGAACCATT TGGGAAGAAA ACTAAGAAGG
421AGAAAAAAGA AAAAGGCAAA GAGAACAACA AACTGGAAGA TCATCACCGA CCGACCTGGC
481TTTCATTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
541TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
601CTTGGCTTTA TATATCTTGT GGAAAGGACG AACATTACCA TATTGCCCGA ATTGGACGCG
661TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)