Construct: ORF TRCN0000466065

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009211.1_s317c1
Derived from:
ccsbBroadEn_03834
DNA Barcode:
AGCTAACCTTCCAGCGCCAGCCTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BEGAIN (57596)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466065
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57596 BEGAIN brain enriched guanylate ki... NM_001159531.1 100% 100%
2 human 57596 BEGAIN brain enriched guanylate ki... NM_020836.4 100% 100%
3 human 57596 BEGAIN brain enriched guanylate ki... XM_005267921.3 100% 100%
4 human 57596 BEGAIN brain enriched guanylate ki... XM_017021521.1 100% 100%
5 human 57596 BEGAIN brain enriched guanylate ki... XM_005267920.5 98% 98% 1_36del
6 human 57596 BEGAIN brain enriched guanylate ki... XM_005267919.4 97.8% 97.8% 1_39del
7 human 57596 BEGAIN brain enriched guanylate ki... XM_011537031.1 96.8% 96.8% 1_57del
8 human 57596 BEGAIN brain enriched guanylate ki... XM_024449669.1 94.5% 95.1% 1_93del;96_98delCTG;101_102insGAAACT
9 human 57596 BEGAIN brain enriched guanylate ki... XM_024449670.1 94.5% 95.1% 1_93del;96_98delCTG;101_102insGAAACT
10 human 57596 BEGAIN brain enriched guanylate ki... XM_024449671.1 90% 90.6% (many diffs)
11 mouse 380785 Begain brain-enriched guanylate ki... XM_006516044.2 85.4% 86% (many diffs)
12 mouse 380785 Begain brain-enriched guanylate ki... XM_011244130.2 85.4% 86% (many diffs)
13 mouse 380785 Begain brain-enriched guanylate ki... XM_006516043.3 83.6% 84.2% (many diffs)
14 mouse 380785 Begain brain-enriched guanylate ki... XM_006516042.1 83.1% 83.6% (many diffs)
15 mouse 380785 Begain brain-enriched guanylate ki... NM_001163175.1 82.8% 83.4% (many diffs)
16 mouse 380785 Begain brain-enriched guanylate ki... XM_011244128.2 81.5% 81.9% (many diffs)
17 mouse 380785 Begain brain-enriched guanylate ki... XM_006516041.3 79.8% 80.3% (many diffs)
18 mouse 380785 Begain brain-enriched guanylate ki... XM_006516040.3 79.3% 79.8% (many diffs)
19 mouse 380785 Begain brain-enriched guanylate ki... XM_006516039.2 79.1% 79.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1845
ORF length:
1779
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gaaactcagc gcgctgcagg agcagaaggg cgagctgcgc aagcggctgt
121cctacaccac acacaagctc gagaagctcg agaccgagtt cgactccacg cgccactacc
181tggagatcga gctgcggcgc gcgcaggagg aactggagaa ggtcacggag aagctgcgca
241ggattcagag caactacatg gcactgcaga ggatcaacca ggagctggag gacaagctgt
301accgcatggg ccagcactat gaggaggaga agcgtgcgct gagccacgag attgttgccc
361tcaacagcca tctgctagaa gccaaggtga ccatcgacaa gctgtcagag gacaacgagc
421tctataggaa ggactgcaat ctagcggccc agctgctgca gtgcagccag acctacggca
481gggtccacaa ggtgtctgag ctgccctcgg atttccagga gcgcgtgagc ctgcacatgg
541agaagcacgg ctgcagcctg ccatccccgc tctgccaccc ggcctacgcc gacagcgtcc
601ccacctgcgt cattgccaag gtgctggaga agccggaccc cgccagcctg tcctcccgcc
661tgtccgatgc ctccgcccgc gacctggcct tctgcgacgg ggtggagaaa ccaggcccgc
721ggccccccta caagggagac atctactgca gtgacacagc cctctactgc ccggaggagc
781ggcggcgaga ccggcggcct agcgtggacg cgcccgtgac cgacgtgggc ttcctgcggg
841cccagaactc cactgacagc gcggccgagg aggaggagga ggccgaggcg gcggccttcc
901cggcgggctt ccagcatgag gccttcccca gctacgcagg ctcactgccc acgtccagct
961cctactccag cttcagcgcc acgtcggagg agaaggagca cgcgcaggcc agcacgctga
1021ccgcgtcgca gcaggccatc tacctgaaca gccgcgacga gctcttcgac cgcaagccac
1081ccgccaccac ctacgagggc agccctcgct ttgccaaggc cacggccgcg gtggcggccc
1141cgctggaggc cgaagtggcc ccaggcttcg ggcggaccat gtcaccgtac ccggccgaga
1201ccttccgctt cccggcctct ccgggtcccc agcaggccct gatgccccca aacctgtgga
1261gcctgcgggc caagccgggg accgcccggc tccccgggga ggacatgagg ggccagtggc
1321gtcccctgag cgtggaggac atcggcgcct actcctaccc cgtgagcgct gccggccgcg
1381cctcaccctg cagcttctct gaacgctact acggcggggc cgggggcagc ccgggcaaga
1441aggccgacgg ccgcgccagc ccgctctacg ccagctacaa ggccgacagc ttctccgagg
1501gggacgacct ctcccagggc cacctggcag agccctgctt cctgcgggcg ggcggcgacc
1561tgagccTCAG TCCCGGCCGC TCGGCTGACC CACTGCCCGG CTATGCACCC AGCGAGGGGG
1621GGGACGGGGA CAGGCTCGGG GTGCAGCTGT GTGGGACCGC CAGCAGCCCT GAGCCCGAGC
1681AGGGTTCCAG GGACTCCTTG GAGCCGAGCT CCATGGAGGC CTCCCCGGAA ATGCATCCTG
1741CCGCCCGCCT CAGCCCCCAG CAGGCCTTTC CGCGGACTGG TGGCTCGGGG CTGAGCCGCA
1801AGGACAGCCT CACCAAGGCC CAGCTCTACG GAACCTTGCT CAACTGCCCA ACTTTCTTGT
1861ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1921AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1981GAAAGGACGA AGCTAACCTT CCAGCGCCAG CCTAACGCGT TAAGTCgaca atcaacctct
2041ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)