Construct: ORF TRCN0000466145
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015881.1_s317c1
- Derived from:
- ccsbBroadEn_15985
- DNA Barcode:
- GTACACCCTACCGTCGCATACGAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARSJ (79642)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466145
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008597.2 | 19.9% | 3% | 1_775del;1031_1281del |
| 2 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008598.2 | 19.9% | 3% | 1_775del;1031_1281del |
| 3 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008599.2 | 19.9% | 3% | 1_775del;1031_1281del |
| 4 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008600.1 | 19.9% | 3% | 1_775del;1031_1281del |
| 5 | human | 79642 | ARSJ | arylsulfatase family member J | NM_001354211.2 | 17.7% | 1.2% | 1_943del;1199_1440del |
| 6 | human | 79642 | ARSJ | arylsulfatase family member J | XM_011532239.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 7 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008593.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 8 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008594.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 9 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008595.2 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 10 | human | 79642 | ARSJ | arylsulfatase family member J | XM_024454216.1 | 17.5% | 1.2% | 1_943del;1199_1449del |
| 11 | human | 79642 | ARSJ | arylsulfatase family member J | XM_024454215.1 | 17.3% | 3.6% | 1_970del;1226_1467del |
| 12 | human | 79642 | ARSJ | arylsulfatase family member J | XM_011532238.3 | 17.2% | 3.6% | 1_970del;1226_1476del |
| 13 | human | 79642 | ARSJ | arylsulfatase family member J | NM_001354210.2 | 14.2% | 3% | 1_1291del;1547_1788del |
| 14 | human | 79642 | ARSJ | arylsulfatase family member J | NM_024590.4 | 14.1% | 3% | 1_1291del;1547_1797del |
| 15 | human | 79642 | ARSJ | arylsulfatase family member J | XM_017008592.2 | 14.1% | 3% | 1_1291del;1547_1797del |
| 16 | human | 79642 | ARSJ | arylsulfatase family member J | XM_024454214.1 | 14.1% | 3% | 1_1291del;1547_1797del |
| 17 | mouse | 271970 | Arsj | arylsulfatase J | NM_173451.3 | 12.8% | 3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 345
- ORF length:
- 255
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCTCCTGG GCAGCAGGCT ATGGGATCTG 121 GAACACTGCA ATCCAGTCAG CCATCAGAGT GCAGCACTGG AAATTGCTTA CAGGAAATCC 181 TGGCTACAGC GACTGGGTCC CCCCTCAGTC TTTCAGCAAC CTGGGACCGA ACCGGTGGCA 241 CAATGAACGG ATCACCTTGT CAACTGGCAA AAGTGTATGG CTTTTCAACA TCACAGCCGA 301 CCCATATGAG AGGGTGGACC TATCTAACAG GTATCCAGGA ATCGTGCCCA ACTTTCTTGT 361 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 421 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 481 GAAAGGACGA GTACACCCTA CCGTCGCATA CGACACGCGT TAAGTCgaca atcaacctct 541 ggattacaaa atttgtgaaa gatt