Construct: ORF TRCN0000466162
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013404.1_s317c1
- Derived from:
- ccsbBroadEn_05854
- DNA Barcode:
- GAGGAATCTTCGTGCCCGAAATAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ART3 (419)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466162
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 419 | ART3 | ADP-ribosyltransferase 3 | NM_001130016.2 | 99.9% | 99.7% | 1088C>T |
| 2 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454056.1 | 97.3% | 97.1% | 890_891ins30;1058C>T |
| 3 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454055.1 | 97.1% | 97% | 999_1031del;1121C>T |
| 4 | human | 419 | ART3 | ADP-ribosyltransferase 3 | NM_001179.5 | 97% | 96.9% | 964_965ins33;1055C>T |
| 5 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454057.1 | 97% | 96.6% | 1003_1004ins33;1055C>T |
| 6 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454059.1 | 94.5% | 94.3% | 890_891ins30;934_935ins33;1025C>T |
| 7 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454058.1 | 94.5% | 94% | 890_891ins30;973_974ins33;1025C>T |
| 8 | human | 419 | ART3 | ADP-ribosyltransferase 3 | NM_001130017.2 | 94.2% | 93.8% | 970_971ins66;1022C>T |
| 9 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454060.1 | 94.2% | 93.8% | 970_971ins66;1022C>T |
| 10 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454061.1 | 91.6% | 91.2% | 890_891ins30;940_941ins66;992C>T |
| 11 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454062.1 | 91.4% | 91% | 937_938ins99;989C>T |
| 12 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454063.1 | 91.4% | 91% | 937_938ins99;989C>T |
| 13 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_017008210.2 | 89.3% | 88.9% | 0_1ins90;913_914ins33;965C>T |
| 14 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_017008206.2 | 80% | 74% | (many diffs) |
| 15 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454050.1 | 80% | 74% | (many diffs) |
| 16 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454051.1 | 80% | 74% | (many diffs) |
| 17 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454052.1 | 80% | 74% | (many diffs) |
| 18 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454053.1 | 80% | 74% | (many diffs) |
| 19 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_024454054.1 | 77.8% | 71.9% | (many diffs) |
| 20 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XM_017008208.2 | 73.5% | 67.6% | (many diffs) |
| 21 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XR_002959732.1 | 38.4% | (many diffs) | |
| 22 | human | 419 | ART3 | ADP-ribosyltransferase 3 | XR_002959733.1 | 33.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1233
- ORF length:
- 1167
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa gacgggacat tttgaaatag tcaccatgct gctggcaacc atgattctag 121 tggacatttt ccaggtgaag gctgaagtgt tagacatggc agataatgca tttgatgatg 181 aatacctgaa atgtacggac aggatggaaa ttaaatacgt tccccaactg ctaaaggagg 241 aaaaagcaag ccaccagcaa ttagatactg tgtgggaaaa tgcaaaagcc aaatgggcag 301 cccgaaagac tcaaatcttt ctccctatga attttaagga taaccatgga atagccctga 361 tggcatatat ttccgaagct caagagcaaa ctccctttta ccatctgttc agtgaagctg 421 tgaagatggc tggccaatct cgagaagatt atatctatgg cttccagttc aaagctttcc 481 acttttacct cacaagagcc ctgcagttgc tgagaaaacc ttgtgaggcc agttccaaaa 541 ctgtggtata tagaacaagc cagggcactt catttacatt tggagggcta aaccaagcca 601 ggtttggcca ttttaccttg gcatattcag ccaaacctca ggctgctaat gaccagctca 661 ctgtgttatc catctacaca tgccttggag ttgacattga aaattttctt gataaagaaa 721 gtgaaagaat tactttaata cctctgaatg aggtttttca agtgtcacag gagggggctg 781 gcaataacct tatccttcaa agcataaaca agacctgcag ccattatgag tgtgcatttc 841 taggtggact aaaaaccgaa aactgtattg agaacctaga atattttcaa cccatctatg 901 tctacaaccc tggtgagaaa aaccagaagc ttgaagacca tagtgagaaa aactggaagc 961 ttgaagacca tggtgagaaa aaccagaagc ttgaagacca tggtgtgaaa atccttgaac 1021 ccacccaaat acctggaatg aaaattccag aaccttttcc actacctgaa gataaaagtc 1081 aaggaaatat caacaatcct actccaggtc cagttcctgt tccaggtccc aaaagccatc 1141 cttcTGCATC CTTGGGCAAA CTGCTGCTTC CACAGTTTGG GATGGTCATC ATTTTAATCA 1201 GTGTTTCTGC TATAAATCTC TTTGTTGCTC TGTACCCAAC TTTCTTGTAC AAAGTGGTTG 1261 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1321 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA 1381 GGAATCTTCG TGCCCGAAAT ATACGCGTTA AGTCgacaat caacctctgg attacaaaat 1441 ttgtgaaaga tt