Construct: ORF TRCN0000466195
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001795.1_s317c1
- Derived from:
- ccsbBroadEn_13362
- DNA Barcode:
- TACCCTATTAGCATTCAATTGTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COX7B2 (170712)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466195
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | NM_130902.3 | 98.7% | 98.7% | 1_3delATG |
| 2 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_005248056.4 | 98.7% | 98.7% | 1_3delATG |
| 3 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513630.2 | 98.7% | 98.7% | 1_3delATG |
| 4 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513631.2 | 98.7% | 98.7% | 1_3delATG |
| 5 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513632.2 | 98.7% | 98.7% | 1_3delATG |
| 6 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513633.2 | 98.7% | 98.7% | 1_3delATG |
| 7 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513634.2 | 98.7% | 98.7% | 1_3delATG |
| 8 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513635.2 | 98.7% | 98.7% | 1_3delATG |
| 9 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513636.1 | 98.7% | 98.7% | 1_3delATG |
| 10 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513637.2 | 98.7% | 98.7% | 1_3delATG |
| 11 | human | 170712 | COX7B2 | cytochrome c oxidase subuni... | XM_011513638.2 | 98.7% | 98.7% | 1_3delATG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 330
- ORF length:
- 240
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGTTTCCCTT GGCCAGAAAT GCACTAAGCA 121 GTCTCAAGAT TCAAAGCATT CTGCAAAGCA TGGCAAGACA TAGCCATGTA AAACACTCAC 181 CAGATTTTCA TGATAAATAT GGTAATGCTG TGCTAGCCAG TGGAACTGCT TTCTGTGTTG 241 CTACATGGGT GTTTACAGCC ACTCAGATTG GAATAGAATG GAACCTATCC CCTGTTGGCA 301 GAGTTACCCC AAAAGAGTGG AAACATCAGT ACCCAACTTT CTTGTACAAA GTGGTTGATA 361 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 421 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATACCC 481 TATTAGCATT CAATTGTTAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 541 tgaaagatt