Construct: ORF TRCN0000466304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007177.1_s317c1
- Derived from:
- ccsbBroadEn_11348
- DNA Barcode:
- TGCATCGCAGTTCCCCTTGCGCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRFIP1 (9208)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466304
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | NM_001137551.1 | 26.6% | 26.6% | 1_867del |
| 2 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_005246142.2 | 25.9% | 25.9% | 1_897del |
| 3 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_005246141.4 | 24.5% | 24.5% | 1_969del |
| 4 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005263.2 | 22.5% | 22.5% | 1_1083del |
| 5 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005262.2 | 20.1% | 20.1% | 1_1245del |
| 6 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005261.2 | 19.4% | 19.4% | 1_1245del;1451_1510del |
| 7 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005260.2 | 19.4% | 19.4% | 1_1308del |
| 8 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005258.2 | 17.5% | 17.5% | 1_1482del |
| 9 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005257.2 | 17% | 17% | 1_1533del |
| 10 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005256.2 | 16.9% | 16.9% | 1_1482del;1688_1747del |
| 11 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005255.2 | 16.4% | 16.4% | 1_1596del |
| 12 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | NM_001137550.2 | 16.4% | 16.4% | 1_1605del |
| 13 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005254.2 | 15.8% | 15.8% | 1_1668del |
| 14 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005253.2 | 15.4% | 15.4% | 1_1668del;1874_1933del |
| 15 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739073.2 | 10.9% | (many diffs) | |
| 16 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739071.1 | 3.3% | 1_8172del;8488_9273del | |
| 17 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739067.1 | 3.3% | 1_8252del;8568_9353del | |
| 18 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739068.1 | 3.3% | 1_8273del;8589_9374del | |
| 19 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739070.1 | 3.3% | 1_8314del;8630_9415del | |
| 20 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739063.1 | 3.3% | 1_8343del;8659_9444del | |
| 21 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_002959364.1 | 3.3% | 1_8344del;8660_9445del | |
| 22 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739066.1 | 3.3% | 1_8345del;8661_9446del | |
| 23 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739060.1 | 3.3% | 1_8417del;8733_9518del | |
| 24 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739072.1 | 3.3% | 1_8418del;8734_9519del | |
| 25 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739059.2 | 3.3% | 1_8443del;8759_9544del | |
| 26 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739069.1 | 3.2% | 1_8450del;8766_9551del | |
| 27 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739061.1 | 3.2% | 1_8459del;8775_9560del | |
| 28 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739054.1 | 3.2% | 1_8513del;8829_9614del | |
| 29 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739056.2 | 3.2% | 1_8515del;8831_9616del | |
| 30 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739055.2 | 3.2% | 1_8530del;8846_9631del | |
| 31 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739057.1 | 3.2% | 1_8531del;8847_9632del | |
| 32 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739065.1 | 3.2% | 1_8548del;8864_9649del | |
| 33 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739053.1 | 3.2% | 1_8591del;8907_9692del | |
| 34 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739052.2 | 3.2% | 1_8602del;8918_9703del | |
| 35 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739064.1 | 3.2% | 1_8604del;8920_9705del | |
| 36 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739051.2 | 3.2% | 1_8629del;8945_9730del | |
| 37 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739062.1 | 3.2% | 1_8636del;8952_9737del | |
| 38 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739050.2 | 3.2% | 1_8662del;8978_9763del | |
| 39 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739049.2 | 3.2% | 1_8701del;9017_9802del | |
| 40 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739058.1 | 3.2% | 1_8710del;9026_9811del | |
| 41 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739047.2 | 3.1% | 1_8767del;9083_9868del | |
| 42 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739045.2 | 3.1% | 1_8851del;9167_9952del | |
| 43 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739043.1 | 3.1% | 1_8866del;9182_9967del | |
| 44 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739044.2 | 3.1% | 1_8881del;9197_9982del | |
| 45 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739042.2 | 3.1% | 1_8890del;9206_9991del | |
| 46 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739041.2 | 3.1% | 1_8914del;9230_10015del | |
| 47 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739039.2 | 3.1% | 1_8953del;9269_10054del | |
| 48 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739048.1 | 3.1% | 1_8956del;9272_10057del | |
| 49 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739040.1 | 3% | 1_9118del;9434_10219del | |
| 50 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739046.1 | 3% | 1_9198del;9514_10299del | |
| 51 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529215.1 | 24% | 25.8% | (many diffs) |
| 52 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529216.2 | 23.4% | 25.2% | (many diffs) |
| 53 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | NM_001111312.1 | 22.1% | 23.8% | (many diffs) |
| 54 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529214.1 | 20.7% | 22.3% | (many diffs) |
| 55 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319019.1 | 18.3% | 19.7% | (many diffs) |
| 56 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319017.1 | 17.5% | 18.9% | (many diffs) |
| 57 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319004.1 | 17.2% | 18.6% | (many diffs) |
| 58 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319000.1 | 16.7% | 18% | (many diffs) |
| 59 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318999.1 | 16.6% | 17.8% | (many diffs) |
| 60 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318996.1 | 16.3% | 17.6% | (many diffs) |
| 61 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318987.1 | 16% | 17.3% | (many diffs) |
| 62 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318974.1 | 15.7% | 16.9% | (many diffs) |
| 63 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529213.3 | 15.7% | 16.9% | (many diffs) |
| 64 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529212.3 | 15.1% | 16.2% | (many diffs) |
| 65 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318969.1 | 15% | 16.2% | (many diffs) |
| 66 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | NM_008515.4 | 15% | 16.2% | (many diffs) |
| 67 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318966.1 | 14.9% | 16.1% | (many diffs) |
| 68 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318965.1 | 14.7% | 15.8% | (many diffs) |
| 69 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318961.1 | 14.5% | 15.7% | (many diffs) |
| 70 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318960.1 | 14.4% | 15.5% | (many diffs) |
| 71 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | NM_001310732.1 | 14.2% | 15.3% | (many diffs) |
| 72 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318958.1 | 14.2% | 15.3% | (many diffs) |
| 73 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529209.3 | 13.7% | 14.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 405
- ORF length:
- 315
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGCATGTAAT GGACCTACAA AGGGATGCCA 121 ACAGACAGAT CAGCGACCTC AAATTTAAAC TTGCAAAATC TGAGCAAGAG ATAACTGCAT 181 TAGAACAAAA TGTAATAAGG TTAGAGAGTC AAGTATCACG TTACAAATCA GCGGCTGAAA 241 ATGCAGAAAA AATAGAAGAT GAACTTAAGG CAGAAAAACG GAAACTCCAA AGAGAGCTCC 301 GCTCTGCATT GGATAAAACA GAAGAGCTCG AGGTGAGCAA CGGCCACTTA GTGAAGCGTC 361 TGGAAAAAAT GAAAGCAAAT CGGAGTGCAC TCTTGTCCCA GCAGTACCCA ACTTTCTTGT 421 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 481 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 541 GAAAGGACGA TGCATCGCAG TTCCCCTTGC GCGTACGCGT TAAGTCgaca atcaacctct 601 ggattacaaa atttgtgaaa gatt