Construct: ORF TRCN0000466561

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008217.1_s317c1
Derived from:
ccsbBroadEn_06641
DNA Barcode:
AGGAGTTACCTCAATTTCCTCCTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NINJ1 (4814)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466561
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4814 NINJ1 ninjurin 1 NM_004148.4 99.7% 99.3% 329C>A
2 human 4814 NINJ1 ninjurin 1 XM_011518716.1 66.8% 66.4% 0_1ins150;179C>A
3 mouse 18081 Ninj1 ninjurin 1 NM_013610.2 86.8% 88.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
522
ORF length:
456
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ctcgggaacc gaggagtacg agctcaacgg cggcctgcct ccgggcacac
121ccggctcccc ggacgcctcg ccggcccgct ggggctGGAG GCACGGGCCC ATCAACGTGA
181ACCATTACGC CAGCAAGAAG AGCGCAGCCG AGAGCATGCT GGACATCGCG CTGCTGATGG
241CCAACGCGTC CCAGCTGAAG GCCGTCGTGG AACAGGGCCC CAGCTTCGCC TTCTATGTGC
301CCCTGGTGGT CCTCATCTCC ATCTCCCTTG TGCTGCAGAT CGGCGTGGGG GTGCTGCTCA
361TCTTCCTTGT CAAGTACGAC CTTAACAACC CGGACAAGCA CGCCAAGCTG GACTTCCTCA
421ACAACCTGGC CACGGGCCTG GTGTTCATCA TCGTGGTAGT CAACATCTTC ATCACGGCCT
481TCGGGGTCCA GAAGCCCTTG ATGGACATGG CACCCCAGCA GTACCCAACT TTCTTGTACA
541AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
601AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
661AGGACGAAGG AGTTACCTCA ATTTCCTCCT GACGCGTTAA GTCgacaatc aacctctgga
721ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)