Construct: ORF TRCN0000466579

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003291.1_s317c1
Derived from:
ccsbBroadEn_09119
DNA Barcode:
ACTGATTAAGACGAGGACTCCACT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ROPN1L (83853)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466579
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83853 ROPN1L rhophilin associated tail p... NM_001201466.2 99.8% 99.5% 467C>G
2 human 83853 ROPN1L rhophilin associated tail p... NM_031916.5 99.8% 99.5% 467C>G
3 human 83853 ROPN1L rhophilin associated tail p... XM_017009947.2 90.8% 86.9% (many diffs)
4 human 83853 ROPN1L rhophilin associated tail p... XM_017009946.2 88% 81.3% (many diffs)
5 human 83853 ROPN1L rhophilin associated tail p... XM_006714504.3 83.1% 79.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
756
ORF length:
690
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc gcttcccgac accatgttct gcgctcagca gatccacatt cccccggagc
121tgccggacat cctgaagcaa ttcaccaagg ctgccatccg cacccagccg gccgacgtgc
181tgcggtggtc cgcgggctat ttttcagctc tgtcgagagg agatccactt cctgtaaagg
241acagaatgga aatgcccacg gcaacccaga aaacagacac aggcctgact caaggactcc
301tgaaagtttt gcacaagcag tgtcaccaca agcggtatgt ggaattaaca gatcttgagc
361agaagtggaa gaacttgtgc ctgccgaagg aaaaattcaa agcgctctta caactggatc
421cttgtgaaaa caaaatcaag tggataaact ttttagcgct tGGATGCAGC ATGCTTGGTG
481GGTCCTTGAA CACTGCGCTG AAGCACCTGT GCGAGATCCT CACGGACGAT CGGGAGGGCG
541GGCCCGCTCG CATCCCCTTC AAGACGTTTT CCTACGTTTA CCGCTACTTG GCCAGATTAG
601ACTCAGATGT GTCTCCCTTG GAGACGGAAT CCTACCTTGC CTCTCTAAAG GAAAATATAG
661ACGCCAGGAA GAACGGCATG ATAGGTCTTT CAGATTTCTT CTTTCCAAAG AGGAAACTTT
721TAGAAAGCAT TGAAAACTCT GAAGATGTAG GCCATTACCC AACTTTCTTG TACAAAGTGG
781TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
841CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
901AACTGATTAA GACGAGGACT CCACTACGCG TTAAGTCgac aatcaacctc tggattacaa
961aatttgtgaa agatt

Download FASTA (ORF) (Full)