Construct: ORF TRCN0000466614

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014912.1_s317c1
Derived from:
ccsbBroadEn_06660
DNA Barcode:
AAAGTCTCTCTGTCTGGGCCCTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NTRK3 (4916)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466614
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4916 NTRK3 neurotrophic receptor tyros... NM_001007156.2 99.9% 100% 1488C>G
2 human 4916 NTRK3 neurotrophic receptor tyros... XM_011521637.3 99.8% 100% 678C>T;1488C>G
3 human 4916 NTRK3 neurotrophic receptor tyros... XM_024449934.1 99.8% 100% 678C>T;1488C>G
4 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022247.2 98.5% 98.5% 678C>T;1204_1205ins24;1464C>G
5 human 4916 NTRK3 neurotrophic receptor tyros... NM_001320134.1 92.5% 92.4% 1488C>G;1585_1586ins135
6 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022248.2 91.2% 91% (many diffs)
7 human 4916 NTRK3 neurotrophic receptor tyros... XM_024449935.1 88.3% 85% (many diffs)
8 human 4916 NTRK3 neurotrophic receptor tyros... XM_006720548.4 86.1% 86.2% 678C>T;1488C>G;1584_1585ins252
9 human 4916 NTRK3 neurotrophic receptor tyros... XM_024449936.1 83.8% 83.9% 0_1ins294;384C>T;1194C>G
10 human 4916 NTRK3 neurotrophic receptor tyros... XM_006720545.4 81.7% 75.3% (many diffs)
11 human 4916 NTRK3 neurotrophic receptor tyros... XM_006720549.4 80.3% 73.6% (many diffs)
12 human 4916 NTRK3 neurotrophic receptor tyros... XM_006720550.4 79% 72.2% (many diffs)
13 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022242.2 78.3% 71.8% (many diffs)
14 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022250.2 76.6% 76.5% (many diffs)
15 human 4916 NTRK3 neurotrophic receptor tyros... XM_011521638.3 76.4% 76.1% (many diffs)
16 human 4916 NTRK3 neurotrophic receptor tyros... NM_002530.4 71% 65.4% (many diffs)
17 human 4916 NTRK3 neurotrophic receptor tyros... XM_006720543.4 71% 65.4% (many diffs)
18 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022240.1 71% 65.4% (many diffs)
19 human 4916 NTRK3 neurotrophic receptor tyros... NM_001243101.1 70.1% 64.3% (many diffs)
20 human 4916 NTRK3 neurotrophic receptor tyros... XM_006720544.4 70.1% 64.3% (many diffs)
21 human 4916 NTRK3 neurotrophic receptor tyros... NM_001012338.2 69.8% 64.3% (many diffs)
22 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022253.2 69.8% 64.3% (many diffs)
23 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022254.2 69% 63.5% (many diffs)
24 human 4916 NTRK3 neurotrophic receptor tyros... NM_001320135.1 68.1% 61.8% (many diffs)
25 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022241.1 62.9% 55.3% (many diffs)
26 human 4916 NTRK3 neurotrophic receptor tyros... XR_001751293.2 62.4% (many diffs)
27 human 4916 NTRK3 neurotrophic receptor tyros... XR_002957645.1 61.4% (many diffs)
28 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022243.1 59.2% 53.7% (many diffs)
29 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022244.2 59.2% 53.7% (many diffs)
30 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022245.2 59.2% 53.7% (many diffs)
31 human 4916 NTRK3 neurotrophic receptor tyros... XM_024449933.1 58.2% 52.6% (many diffs)
32 human 4916 NTRK3 neurotrophic receptor tyros... XM_017022251.2 24.4% 17.9% (many diffs)
33 human 4916 NTRK3 neurotrophic receptor tyros... XR_001751292.2 10.9% (many diffs)
34 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... NM_182809.2 92% 95.9% (many diffs)
35 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XM_006540692.3 84.7% 88.5% (many diffs)
36 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XM_017322023.1 81.5% 81.8% (many diffs)
37 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... NM_008746.5 63.6% 62.6% (many diffs)
38 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XM_011250817.2 62.5% 61.6% (many diffs)
39 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XM_006540691.3 61.7% 60.8% (many diffs)
40 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XM_011250816.2 60.8% 59.8% (many diffs)
41 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XR_001785487.1 22.4% (many diffs)
42 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XR_001785488.1 21.6% (many diffs)
43 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XR_882023.2 19.1% (many diffs)
44 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XR_882022.2 11.9% (many diffs)
45 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XR_001785486.1 11.7% (many diffs)
46 mouse 18213 Ntrk3 neurotrophic tyrosine kinas... XR_882025.2 10.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1902
ORF length:
1836
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tgtctctctt tgcccagcca agtgtagttt ctggcggatt ttcttgctgg
121gaagcgtctg gctggactat gtgggctccg tgctggcttg ccctgcaaat tgtgtctgca
181gcaagactga gatcaattgc cggcggccgg acgatgggaa cctcttcccc ctcctggaag
241ggcaggattc agggaacagc aatgggaacg ccagtatcaa catcacggac atctcaagga
301atatcacttc catacacata gagaactggc gcagtcttca cacgctcaac gccgtggaca
361tggagctcta caccggactt caaaagctga ccatcaagaa ctcaggactt cggagcattc
421agcccagagc ctttgccaag aacccccatt tgcgttatat aaacctgtca agtaaccggc
481tcaccacact ctcgtggcag ctcttccaga cgctgagtct tcgggaattg cagttggagc
541agaacttttt caactgcagc tgtgacatcc gctggatgca gctctggcag gagcaggggg
601aggccaagct caacagccag aacctctact gcatcaacgc tgatggctcc cagcttcctc
661tcttccgcat gaacatcagt cagtgtgacc ttcctgagat cagcgtgagc cacgtcaacc
721tgaccgtacg agagggtgac aatgctgtta tcacttgcaa tggctctgga tcaccccttc
781ctgatgtgga ctggatagtc actgggctgc agtccatcaa cactcaccag accaatctga
841actggaccaa tgttcatgcc atcaacttga cgctggtgaa tgtgacgagt gaggacaatg
901gcttcaccct gacgtgcatt gcagagaacg tggtgggcat gagcaatgcc agtgttgccc
961tcactgtcta ctatccccca cgtgtggtga gcctggagga gcctgagctg cgcctggagc
1021actgcatcga gtttgtggtg cgtggcaacc ccccaccaac gctgcactgg ctgcacaatg
1081ggcagcctct gcgggagtcc aagatcatcc atgtggaata ctaccaagag ggagagattt
1141ccgagggctg cctgctcttc aacaagccca cccactacaa caatggcaac tataccctca
1201ttgccaaaaa cccactgggc acagccaacc agaccatcaa tggccacttc ctcaaggagc
1261cctttccaga gagcacggat aactttatct tgtttgacga agtgagtccc acacctccta
1321tcactgtgac ccacaaacca gaagaagaca cttttggggt atccatagca gttggacttg
1381ctgcttttgc ctgtgtcctg ttggtggttc tcttcgtcat gatcaacaaa tatggtcgac
1441ggtccaaatt tggaatgaag ggtcccgtgg ctgtcatcag tggtgaggag gactcagcca
1501gcccactgca ccacatcaac cacggcatca ccacgccctc gtcactGGAT GCGGGGCCCG
1561ACACTGTGGT CATTGGCATG ACTCGCATCC CTGTCATTGA GAACCCCCAG TACTTCCGTC
1621AGGGACACAA CTGCCACAAG CCGGACACGT GGGTCTTTTC AAACATAGAC AATCATGGGA
1681TATTAAACTT GAAGGACAAT AGAGATCATC TAGTCCCATC AACTCACTAT ATATATGAGG
1741AACCTGAGGT CCAGAGTGGG GAAGTGTCTT ACCCAAGGTC ACATGGTTTC AGAGAAATTA
1801TGTTGAATCC AATAAGCCTT CCCGGACATT CCAAGCCTCT TAACCATGGC ATCTATGTTG
1861AGGATGTCAA TGTTTATTTC AGCAAAGGAC GTCATGGCTT TTACCCAACT TTCTTGTACA
1921AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1981AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2041AGGACGAAAA GTCTCTCTGT CTGGGCCCTC GACGCGTTAA GTCgacaatc aacctctgga
2101ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)