Construct: ORF ccsbBroadEn_06660
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014912.1_s300c1, BRDN0000386789
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NTRK3 (4916)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | NM_001007156.2 | 99.9% | 100% | 1488C>G |
| 2 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_011521637.3 | 99.8% | 100% | 678C>T;1488C>G |
| 3 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_024449934.1 | 99.8% | 100% | 678C>T;1488C>G |
| 4 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022247.2 | 98.5% | 98.5% | 678C>T;1204_1205ins24;1464C>G |
| 5 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | NM_001320134.1 | 92.5% | 92.4% | 1488C>G;1585_1586ins135 |
| 6 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022248.2 | 91.2% | 91% | (many diffs) |
| 7 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_024449935.1 | 88.3% | 85% | (many diffs) |
| 8 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_006720548.4 | 86.1% | 86.2% | 678C>T;1488C>G;1584_1585ins252 |
| 9 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_024449936.1 | 83.8% | 83.9% | 0_1ins294;384C>T;1194C>G |
| 10 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_006720545.4 | 81.7% | 75.3% | (many diffs) |
| 11 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_006720549.4 | 80.3% | 73.6% | (many diffs) |
| 12 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_006720550.4 | 79% | 72.2% | (many diffs) |
| 13 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022242.2 | 78.3% | 71.8% | (many diffs) |
| 14 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022250.2 | 76.6% | 76.5% | (many diffs) |
| 15 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_011521638.3 | 76.4% | 76.1% | (many diffs) |
| 16 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | NM_002530.4 | 71% | 65.4% | (many diffs) |
| 17 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_006720543.4 | 71% | 65.4% | (many diffs) |
| 18 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022240.1 | 71% | 65.4% | (many diffs) |
| 19 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | NM_001243101.1 | 70.1% | 64.3% | (many diffs) |
| 20 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_006720544.4 | 70.1% | 64.3% | (many diffs) |
| 21 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | NM_001012338.2 | 69.8% | 64.3% | (many diffs) |
| 22 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022253.2 | 69.8% | 64.3% | (many diffs) |
| 23 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022254.2 | 69% | 63.5% | (many diffs) |
| 24 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | NM_001320135.1 | 68.1% | 61.8% | (many diffs) |
| 25 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022241.1 | 62.9% | 55.3% | (many diffs) |
| 26 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XR_001751293.2 | 62.4% | (many diffs) | |
| 27 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XR_002957645.1 | 61.4% | (many diffs) | |
| 28 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022243.1 | 59.2% | 53.7% | (many diffs) |
| 29 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022244.2 | 59.2% | 53.7% | (many diffs) |
| 30 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022245.2 | 59.2% | 53.7% | (many diffs) |
| 31 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_024449933.1 | 58.2% | 52.6% | (many diffs) |
| 32 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XM_017022251.2 | 24.4% | 17.9% | (many diffs) |
| 33 | human | 4916 | NTRK3 | neurotrophic receptor tyros... | XR_001751292.2 | 10.9% | (many diffs) | |
| 34 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | NM_182809.2 | 92% | 95.9% | (many diffs) |
| 35 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XM_006540692.3 | 84.7% | 88.5% | (many diffs) |
| 36 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XM_017322023.1 | 81.5% | 81.8% | (many diffs) |
| 37 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | NM_008746.5 | 63.6% | 62.6% | (many diffs) |
| 38 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XM_011250817.2 | 62.5% | 61.6% | (many diffs) |
| 39 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XM_006540691.3 | 61.7% | 60.8% | (many diffs) |
| 40 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XM_011250816.2 | 60.8% | 59.8% | (many diffs) |
| 41 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XR_001785487.1 | 22.4% | (many diffs) | |
| 42 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XR_001785488.1 | 21.6% | (many diffs) | |
| 43 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XR_882023.2 | 19.1% | (many diffs) | |
| 44 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XR_882022.2 | 11.9% | (many diffs) | |
| 45 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XR_001785486.1 | 11.7% | (many diffs) | |
| 46 | mouse | 18213 | Ntrk3 | neurotrophic tyrosine kinas... | XR_882025.2 | 10.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1902
- ORF length:
- 1836
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGTCTCTCTT TGCCCAGCCA AGTGTAGTTT CTGGCGGATT TTCTTGCTGG 121 GAAGCGTCTG GCTGGACTAT GTGGGCTCCG TGCTGGCTTG CCCTGCAAAT TGTGTCTGCA 181 GCAAGACTGA GATCAATTGC CGGCGGCCGG ACGATGGGAA CCTCTTCCCC CTCCTGGAAG 241 GGCAGGATTC AGGGAACAGC AATGGGAACG CCAGTATCAA CATCACGGAC ATCTCAAGGA 301 ATATCACTTC CATACACATA GAGAACTGGC GCAGTCTTCA CACGCTCAAC GCCGTGGACA 361 TGGAGCTCTA CACCGGACTT CAAAAGCTGA CCATCAAGAA CTCAGGACTT CGGAGCATTC 421 AGCCCAGAGC CTTTGCCAAG AACCCCCATT TGCGTTATAT AAACCTGTCA AGTAACCGGC 481 TCACCACACT CTCGTGGCAG CTCTTCCAGA CGCTGAGTCT TCGGGAATTG CAGTTGGAGC 541 AGAACTTTTT CAACTGCAGC TGTGACATCC GCTGGATGCA GCTCTGGCAG GAGCAGGGGG 601 AGGCCAAGCT CAACAGCCAG AACCTCTACT GCATCAACGC TGATGGCTCC CAGCTTCCTC 661 TCTTCCGCAT GAACATCAGT CAGTGTGACC TTCCTGAGAT CAGCGTGAGC CACGTCAACC 721 TGACCGTACG AGAGGGTGAC AATGCTGTTA TCACTTGCAA TGGCTCTGGA TCACCCCTTC 781 CTGATGTGGA CTGGATAGTC ACTGGGCTGC AGTCCATCAA CACTCACCAG ACCAATCTGA 841 ACTGGACCAA TGTTCATGCC ATCAACTTGA CGCTGGTGAA TGTGACGAGT GAGGACAATG 901 GCTTCACCCT GACGTGCATT GCAGAGAACG TGGTGGGCAT GAGCAATGCC AGTGTTGCCC 961 TCACTGTCTA CTATCCCCCA CGTGTGGTGA GCCTGGAGGA GCCTGAGCTG CGCCTGGAGC 1021 ACTGCATCGA GTTTGTGGTG CGTGGCAACC CCCCACCAAC GCTGCACTGG CTGCACAATG 1081 GGCAGCCTCT GCGGGAGTCC AAGATCATCC ATGTGGAATA CTACCAAGAG GGAGAGATTT 1141 CCGAGGGCTG CCTGCTCTTC AACAAGCCCA CCCACTACAA CAATGGCAAC TATACCCTCA 1201 TTGCCAAAAA CCCACTGGGC ACAGCCAACC AGACCATCAA TGGCCACTTC CTCAAGGAGC 1261 CCTTTCCAGA GAGCACGGAT AACTTTATCT TGTTTGACGA AGTGAGTCCC ACACCTCCTA 1321 TCACTGTGAC CCACAAACCA GAAGAAGACA CTTTTGGGGT ATCCATAGCA GTTGGACTTG 1381 CTGCTTTTGC CTGTGTCCTG TTGGTGGTTC TCTTCGTCAT GATCAACAAA TATGGTCGAC 1441 GGTCCAAATT TGGAATGAAG GGTCCCGTGG CTGTCATCAG TGGTGAGGAG GACTCAGCCA 1501 GCCCACTGCA CCACATCAAC CACGGCATCA CCACGCCCTC GTCACTGGAT GCGGGGCCCG 1561 ACACTGTGGT CATTGGCATG ACTCGCATCC CTGTCATTGA GAACCCCCAG TACTTCCGTC 1621 AGGGACACAA CTGCCACAAG CCGGACACGT GGGTCTTTTC AAACATAGAC AATCATGGGA 1681 TATTAAACTT GAAGGACAAT AGAGATCATC TAGTCCCATC AACTCACTAT ATATATGAGG 1741 AACCTGAGGT CCAGAGTGGG GAAGTGTCTT ACCCAAGGTC ACATGGTTTC AGAGAAATTA 1801 TGTTGAATCC AATAAGCCTT CCCGGACATT CCAAGCCTCT TAACCATGGC ATCTATGTTG 1861 AGGATGTCAA TGTTTATTTC AGCAAAGGAC GTCATGGCTT TTACCCAACT TTCTTGTACA 1921 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac