Construct: ORF TRCN0000466626

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016691.1_s317c1
Derived from:
ccsbBroadEn_00301
DNA Barcode:
GAGAGAACCATGAACGTTGCGATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHD2 (1106)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466626
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1106 CHD2 chromodomain helicase DNA b... NM_001042572.3 100% 100%
2 human 1106 CHD2 chromodomain helicase DNA b... NM_001271.4 27.3% 27.4% 1503_5484delinsG
3 mouse 244059 Chd2 chromodomain helicase DNA b... NM_001081345.2 24.8% 26.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1569
ORF length:
1503
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat gagaaataag gacaaaagcc aagaggagga cagttcgcta cacagcaatg
121catcgagtca ctcagcctct gaagaagctt cgggttcaga ctcaggcagt cagtcggaaa
181gtgagcaggg aagtgatcca ggaagtggac atggcagcga gtcgaacagc agctctgaat
241cttctgagag tcagtcggaa tctgagagcg aatcagcagg ttccaaatcc cagccagtcc
301tcccagaagc caaagagaag ccagcctcta agaaggaacg gatagctgat gtgaagaaga
361tgtgggaaga atatcctgat gtttatgggg tcaggcggtc aaaccgaagc agacaagaac
421catcgcgatt taatattaag gaagaggcaa gtagcgggtc tgagagtggg agcccaaaaa
481gaagaggcca gaggcagctg aaaaaacaag aaaaatggaa acaggaaccc tcagaagatg
541aacaggaaca aggcaccagt gcagagagtg agccagaaca aaaaaaagta aaagccagaa
601gacctgtccc cagaagaaca gtgcccaaac ctcgtgttaa aaagcagccg aagactcagc
661gtggaaagag aaaaaagcaa gattcttctg atgaggatga tgatgatgac gaagctccca
721aaaggcagac tcgtcgaaga gcggctaaaa acgttagtta caaagaagat gatgactttg
781agactgactc agatgatctc attgaaatga ctggagaagg agttgatgaa cagcaagata
841atagtgaaac tattgaaaag gtcttagatt caagactggg aaagaaagga gccactggag
901catctactac tgtatatgcg attgaagcta atggcgaccc tagtggtgac tttgacactg
961aaaaggatga aggtgaaatc cagtacctca tcaagtggaa gggttggtct tacatccaca
1021gcacatggga gagtgaagaa tccttacagc aacagaaagt gaagggccta aaaaaactag
1081agaacttcaa gaaaaaagag gacgaaatca aacaatggtt agggaaagtt tctcctgaag
1141atgtagaata tttcaattgc caacaggagc tggcttcaga gttgaataaa cagtatcaga
1201tagtagaaag agtaATAGCT GTGAAGACAA GTAAATCTAC ATTGGGTCAA ACAGATTTTC
1261CAGCTCATAG TCGGAAGCCG GCACCCTCAA ATGAGCCCGA ATATCTATGT AAATGGATGG
1321GACTCCCCTA TTCAGAGTGT AGCTGGGAAG ATGAAGCCCT CATTGGAAAG AAATTCCAGA
1381ATTGCATTGA CAGCTTCCAC AGTAGGAACA ACTCAAAAAC CATCCCAACA AGAGAATGCA
1441AGGCCCTGAA GCAGAGACCA CGATTTGTAG CTTTAAAGAA ACAACCTGCA TATTTAGGAG
1501GGGAGAATCT GGAACTTCGA GATTATCAGC TAGAAGGTCT AAACTGGCTA GCTCATTCCT
1561GGTGCAAGTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1621CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1681TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGAGAGA ACCATGAACG TTGCGATTAC
1741GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)