Construct: ORF TRCN0000466633
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003225.1_s317c1
- Derived from:
- ccsbBroadEn_10760
- DNA Barcode:
- GGTACAGGGGAGCGGACCCTTTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNND1 (1500)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466633
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085467.2 | 73.2% | 73.1% | 1_666del;1257C>T;2423G>A |
| 2 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085468.2 | 73.2% | 73.1% | 1_666del;1257C>T;2423G>A |
| 3 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085469.2 | 73.2% | 73.1% | 1_666del;1257C>T;2423G>A |
| 4 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206890.2 | 73.2% | 73.1% | 1_666del;1257C>T;2423G>A |
| 5 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085466.2 | 72.7% | 72.6% | (many diffs) |
| 6 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085464.2 | 70.7% | 70.4% | (many diffs) |
| 7 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085463.2 | 70.2% | 70% | (many diffs) |
| 8 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206888.2 | 69.3% | 69.2% | 1_807del;1398C>T;2564G>A |
| 9 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206889.2 | 69.3% | 69.2% | 1_807del;1398C>T;2564G>A |
| 10 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206891.2 | 69.3% | 69.2% | 1_807del;1398C>T;2564G>A |
| 11 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206884.2 | 68.8% | 68.8% | (many diffs) |
| 12 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085465.2 | 68.2% | 68% | (many diffs) |
| 13 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206886.2 | 67% | 66.8% | (many diffs) |
| 14 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206883.2 | 66.6% | 66.4% | (many diffs) |
| 15 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085460.2 | 65.3% | 65.2% | 1_969del;1560C>T;2726G>A |
| 16 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085461.2 | 65.3% | 65.2% | 1_969del;1560C>T;2726G>A |
| 17 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085462.2 | 65.3% | 65.2% | 1_969del;1560C>T;2726G>A |
| 18 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206885.2 | 64.8% | 64.8% | (many diffs) |
| 19 | human | 1500 | CTNND1 | catenin delta 1 | NM_001206887.2 | 64.7% | 64.5% | (many diffs) |
| 20 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085459.2 | 63.3% | 63% | (many diffs) |
| 21 | human | 1500 | CTNND1 | catenin delta 1 | NM_001085458.2 | 62.9% | 62.7% | (many diffs) |
| 22 | human | 1500 | CTNND1 | catenin delta 1 | NM_001331.3 | 61.1% | 60.9% | (many diffs) |
| 23 | human | 100528016 | TMX2-CTNND1 | TMX2-CTNND1 readthrough (NM... | NR_037646.1 | 29.2% | (many diffs) | |
| 24 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | NM_001085449.1 | 66% | 71.2% | (many diffs) |
| 25 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_017315210.1 | 63.8% | 68.9% | (many diffs) |
| 26 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498639.3 | 63.4% | 68.2% | (many diffs) |
| 27 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_017315206.1 | 59% | 63.6% | (many diffs) |
| 28 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | NM_001085450.1 | 58.6% | 63.2% | (many diffs) |
| 29 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | NM_007615.4 | 58.6% | 63.2% | (many diffs) |
| 30 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498635.1 | 58.6% | 63.2% | (many diffs) |
| 31 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_017315201.1 | 58.6% | 63.2% | (many diffs) |
| 32 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498636.2 | 58.5% | 63.1% | (many diffs) |
| 33 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498632.2 | 57.2% | 61.5% | (many diffs) |
| 34 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | NM_001085453.1 | 56.9% | 61.5% | (many diffs) |
| 35 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498631.2 | 56.9% | 61.2% | (many diffs) |
| 36 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498625.2 | 56.8% | 61.1% | (many diffs) |
| 37 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498626.3 | 56.8% | 61.1% | (many diffs) |
| 38 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498628.3 | 56.8% | 61.1% | (many diffs) |
| 39 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498630.1 | 56.8% | 61.1% | (many diffs) |
| 40 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_017315179.1 | 56.8% | 61.1% | (many diffs) |
| 41 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | NM_001085448.1 | 56.5% | 61.1% | (many diffs) |
| 42 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_017315208.1 | 56.5% | 61.1% | (many diffs) |
| 43 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498638.1 | 56.4% | 61% | (many diffs) |
| 44 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498634.2 | 55.1% | 59.4% | (many diffs) |
| 45 | mouse | 12388 | Ctnnd1 | catenin (cadherin associate... | XM_006498633.2 | 54.8% | 59% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1896
- ORF length:
- 1830
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat tggtgaggag gtgccatcgg atcaatacta ctgggctcct ttggcccagc 121 atgagcgagg aagtttagca agcttggata gcctgcgcaa aggagggcct ccacctccta 181 attggagaca gccagagctg ccagaggtga tcgccatgct tggattccgc ttggatgctg 241 tcaagtccaa tgcagctgca tacctgcaac acttatgcta ccgcaatgac aaggtgaaga 301 ctgacgtgcg gaagctcaag ggcatcccag tactggtggg attgttagac catcccaaaa 361 aggaagtgca ccttggagcc tgtggagctc tcaagaatat ctcttttgga cgtgaccagg 421 ataacaagat tgccataaaa aactgtgatg gtgtgcctgc ccttgtgcga ttgcttcgaa 481 aggctcgtga tatggacctt actgaagtta ttaccggaac cctgtggaat ctttcatccc 541 atgactcaat caaaatggag attgtggacc atgcactgca tgccttgaca gatgaagtga 601 tcattcctca ttctggttgg gagcgggaac ctaatgaaga ctgtaagcca cgccatattg 661 agtgggaatc ggtgctcacc aacacagctg gctgccttag gaatgtaagc tcagagagga 721 gtgaagctcg ccggaaactt cgggaatgtg atggtttagt tgatgccctc attttcattg 781 ttcaggctga gattgggcag aaggattcag acagcaagct tgtagagaac tgtgtttgcc 841 ttcttcggaa cttatcatat caagttcacc gggagatccc acaggcagag cgttaccaag 901 aggcagctcc caatgttgcc aacaatactg ggccacatgc tgccagttgc tttggggcca 961 agaagggcaa agggaaaaaa cctatagagg atccagcaaa cgatacagtg gatttcccta 1021 aaagaacgag tccagctcga ggctatgagc tcttatttca gccagaggtg gttcggatat 1081 acatctcact tcttaaggag agcaagactc ctgccatcct agaagcctca gctggagcta 1141 tccagaactt gtgtgctggg cgctggacgt atggtcgata catccgctct gctctgcgtc 1201 aagagaaggc tctttctgcc atagctgacc tcctgactaa tgaacatgaa cgggtggtga 1261 aagctgcatc tggagcactg agaaacctgg ctgtggatgc tcgcaacaaa gaattaattg 1321 gtaaacatgc tattcctaac ttggtaaaga atctgccagg aggacagcag aactcctctt 1381 ggaatttctc tgaggacact gtcatctcta ttttgaacac tatcaacgag gttatcgctg 1441 agaacttGGA GGCTGCCAAA AAGCTTCGAG AGACACAGGG TATTGAGAAG CTGGTGTTGA 1501 TCAACAAATC AGGGAACCGC TCAGAAAAAG AAGTTCGAGC AGCAGCACTT GTATTACAGA 1561 CAATCTGGGG ATATAAGGAA CTGCGGAAGC CACTGGAAAA AGAAGGATGG AAGAAATCAG 1621 ACTTTCAGGT GAATCTAAAC AATGCTTCCC GAAGCCAGAG CAGTCATTCA TATGATGATA 1681 GTACTCTCCC TCTCATTGAC CGGAACCAAA AATCAGATAA GAAACCTGAT CGGGAAGAAA 1741 TTCAGATGAG CAATATGGGA TCAAACACAA AATCACTAGA TAACAACTAT TCCACACCAA 1801 ATGAGAGAGG AGACCACAAT AAAACACTGG ATCGATCGGG GGATCTAGGC GACATGGAGC 1861 CATTGAAGGG AACAACACCC TTGATGCAGA AGATTTACCC AACTTTCTTG TACAAAGTGG 1921 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1981 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 2041 AGGTACAGGG GAGCGGACCC TTTTAACGCG TTAAGTCgac aatcaacctc tggattacaa 2101 aatttgtgaa agatt