Construct: ORF TRCN0000466658
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000224.1_s317c1
- Derived from:
- ccsbBroadEn_12561
- DNA Barcode:
- GCCTGGATCCAGAGTTGCCCCGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZXDC (79364)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466658
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79364 | ZXDC | ZXD family zinc finger C | XM_011513119.2 | 48.3% | 47.4% | (many diffs) |
| 2 | human | 79364 | ZXDC | ZXD family zinc finger C | NM_025112.5 | 45.5% | 45.5% | 1_1401del |
| 3 | human | 79364 | ZXDC | ZXD family zinc finger C | XM_006713741.2 | 35.1% | 35.1% | 1_1401del;2126_2127ins267 |
| 4 | human | 79364 | ZXDC | ZXD family zinc finger C | NR_104249.2 | 32.3% | (many diffs) | |
| 5 | human | 79364 | ZXDC | ZXD family zinc finger C | XM_005247757.3 | 31.5% | 31.5% | 1_1401del;2214_2215ins360 |
| 6 | human | 79364 | ZXDC | ZXD family zinc finger C | XR_924169.2 | 29.6% | 1_1466del;2191_2192ins85;2555_3584del | |
| 7 | human | 79364 | ZXDC | ZXD family zinc finger C | NM_001040653.3 | 28.2% | 28.2% | 1_1401del;2129T>A;2130_2131ins444 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1239
- ORF length:
- 1173
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa ggcgcacatg gtcagacagc acagccggcg ccaagatctc ttacctcagc 121 tagaagctcc gagttctctt actcccagca gtgaactcag cagcccaggc caaagtgagc 181 tcactaacat ggatcttgct gcactcttct ctgacacacc tgccaatgct agtggttctg 241 caggtgggtc ggatgaggct ctgaactccg gaatcctgac tattgacgtc acttctgtga 301 gctcctctct gggagggaac ctccctgcta ataatagctc cctagggccg atggaacccc 361 tggtcctggt ggcccacagt gatattcccc caagcctgga cagccctctg gttctcggga 421 cagcagccac ggttctgcag cagggcagct tcagtgtgga tgacgtgcag actgtgagtg 481 caggagcatt aggctgtctg gtggctctgc ccatgaagaa cttgagtgac gacccactgg 541 ctttgacctc caatagtaac ttagcagcac atatcaccac accgacctct tcgagcaccc 601 cccgagaaaa tgccagtgtc ccggaactgc tggctccaat caaggtggag ccggactcgc 661 cttctcgccc aggagcagtt gggcagcagg aaggaagcca tgggctgccc cagtccacgt 721 tgcccagtcc agcagagcag cacggtgccc aggacacaga gctcagtgca ggcactggca 781 acttctattt GGAAAGTGGG GGCTCAGCAA GAACTGATTA CCGAGCCATT CAACTAGCCA 841 AGGAAAAAAA GCAGAGAGGA GCGGGGAGCA ATGCAGGAGC CTCACAGTCT ACTCAGAGAA 901 AAATAAAAGA AGGCAAAATG AGTCCTCCCC ATTTCCATGC AAGCCAGAAC AGTTGGTTGT 961 GTGGGAGCCT CGTGGTGCCC AGCGGAGGAC GGCCAGGACC AGCTCCAGCA GCTGGGGTGC 1021 AGTGCGGGGC GCAGGGCGTC CAGGTCCAGC TGGTGCAGGA TGACCCCTCC GGCGAAGGTG 1081 TCCTGCCCTC GGCCCGCGGC CCAGCCACCT TCCTCCCCTT CCTCACTGTG GACCTGCCCG 1141 TCTACGTCCT CCAGGAGGTG CTCCCCTCAT CTGGAGGCCC TGCTGGACCG GAGGCCACCC 1201 AGTTCCCAGG AAGCACTATC AACCTGCAGG ATCTGCAGTG CCCAGCTTTC TTGTACAAAG 1261 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1321 GAACTAGTCC GTACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA 1381 CGAGCCTGGA TCCAGAGTTG CCCCGTCACG CGTTAAGTCg acaatcaacc tctggattac 1441 aaaatttgtg aaagatt