Construct: ORF TRCN0000466725

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016229.1_s317c1
Derived from:
ccsbBroadEn_04286
DNA Barcode:
TCCGCGATAAGGTCCGCCCATACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD99L2 (83692)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466725
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83692 CD99L2 CD99 molecule like 2 NM_031462.4 100% 100%
2 human 83692 CD99L2 CD99 molecule like 2 NM_001242614.1 96.3% 95.9% 201_212del;668_685del
3 human 83692 CD99L2 CD99 molecule like 2 XM_017029890.2 87.2% 81.2% (many diffs)
4 human 83692 CD99L2 CD99 molecule like 2 NM_134446.4 81.2% 81.2% 130_131ins147
5 human 83692 CD99L2 CD99 molecule like 2 NM_134445.4 72.5% 72.1% 130_131ins216
6 human 83692 CD99L2 CD99 molecule like 2 NM_001184808.1 72.1% 72.1% 275_276ins219
7 human 83692 CD99L2 CD99 molecule like 2 XM_017029891.2 69.6% 63.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
852
ORF length:
786
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt ggcctggcgc tcggcgttcc ttgtctgcct cgctttctcc ttggccaccc
121tggtccagcg aggatctggg gactttgatg attttaacct ggaggatgca gtgaaagaaa
181cttcctcagt aaagcagcca tgggaccaca ccaccaccac cacaaccaat aggccaggaa
241ccaccagagc tccggcaaaa cctccaggta gtggattgga cttggctgat gctttggatg
301atcaagatga tggccgcagg aaaccgggta taggaggaag agagagatgg aaccatgtaa
361ccaccacgac caagaggcca gtaaccacca gagctccagc aaatacttta ggaaatgatt
421ttgacttggc tgatgccctg gatgatcgaa atgatcgaga tgatggccgc aggaaaccaa
481ttgctggagg aggaggtttt tcagacaagg aTCTTGAAGA CATAGTAGGG GGTGGAGAAT
541ACAAACCTGA CAAGGGTAAA GGTGATGGCC GGTACGGCAG CAATGACGAC CCTGGATCTG
601GCATGGTGGC AGAGCCTGGC ACCATTGCCG GGGTGGCCAG CGCCCTGGCC ATGGCCCTCA
661TCGGTGCCGT CTCCAGCTAC ATCTCCTACC AGCAGAAGAA GTTCTGCTTC AGCATTCAGC
721AGGGTCTCAA CGCAGACTAC GTGAAGGGAG AGAACCTGGA AGCCGTGGTA TGTGAGGAAC
781CCCAAGTGAA ATACTCCACG TTGCACACGC AGTCTGCAGA GCCGCCGCCG CCGCCCGAAC
841CAGCCCGGAT CTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
901ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
961CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATCC GCGATAAGGT CCGCCCATAC
1021CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)