Transcript: Human NM_001242614.1

Homo sapiens CD99 molecule like 2 (CD99L2), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
CD99L2 (83692)
Length:
3754
CDS:
229..1047

Additional Resources:

NCBI RefSeq record:
NM_001242614.1
NBCI Gene record:
CD99L2 (83692)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001242614.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000147213 CCGGATAAGTATGAAGCAATT pLKO.1 1736 3UTR 100% 10.800 15.120 N CD99L2 n/a
2 TRCN0000147952 GATCGAAATGATCGAGATGAT pLKO.1 619 CDS 100% 4.950 6.930 N CD99L2 n/a
3 TRCN0000377750 TGAGACTTGGTGCCGAAATTC pLKO_005 1232 3UTR 100% 13.200 9.240 N CD99L2 n/a
4 TRCN0000371713 TGCTGAGGCCTGATGACATTT pLKO_005 1367 3UTR 100% 13.200 9.240 N CD99L2 n/a
5 TRCN0000377751 ACAAACCTGACAAGGGTAAAG pLKO_005 716 CDS 100% 10.800 7.560 N CD99L2 n/a
6 TRCN0000147260 GATGCTTTGGATGATCAAGAT pLKO.1 463 CDS 100% 4.950 3.465 N CD99L2 n/a
7 TRCN0000149059 GCAGTGAAAGAAACTTCCTCA pLKO.1 331 CDS 100% 2.640 1.848 N CD99L2 n/a
8 TRCN0000371764 CACCAGAGCTCCAGCAAATAC pLKO_005 561 CDS 100% 13.200 7.920 N CD99L2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001242614.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04286 pDONR223 100% 96.3% 95.9% None 201_212del;668_685del n/a
2 ccsbBroad304_04286 pLX_304 0% 96.3% 95.9% V5 201_212del;668_685del n/a
3 TRCN0000466725 TCCGCGATAAGGTCCGCCCATACC pLX_317 43.5% 96.3% 95.9% V5 201_212del;668_685del n/a
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