Construct: ORF TRCN0000466733

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005637.1_s317c1
Derived from:
ccsbBroadEn_01950
DNA Barcode:
ATCGATACCGAATTCTCCGGACTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CGGBP1 (8545)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466733
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8545 CGGBP1 CGG triplet repeat binding ... NM_001008390.2 100% 100%
2 human 8545 CGGBP1 CGG triplet repeat binding ... NM_001195308.1 100% 100%
3 human 8545 CGGBP1 CGG triplet repeat binding ... NM_003663.3 100% 100%
4 human 8545 CGGBP1 CGG triplet repeat binding ... XM_024453797.1 100% 100%
5 mouse 106143 Cggbp1 CGG triplet repeat binding ... NM_178647.2 91.6% 98.2% (many diffs)
6 mouse 106143 Cggbp1 CGG triplet repeat binding ... XM_006521658.2 91.6% 98.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
567
ORF length:
501
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gcgatttgta gtaacagcac cacctgctcg aaaccgttct aagactgctt
121tgtatgtgac tcccctggat cgagtcactg agtttGGAGG TGAGCTGCAT GAAGATGGAG
181GAAAACTCTT CTGCACTTCT TGCAATGTGG TTCTGAATCA TGTTCGCAAG TCTGCCATTA
241GTGACCACCT CAAGTCAAAG ACTCATACCA AGAGGAAGGC AGAATTTGAA GAGCAGAATG
301TGAGAAAGAA GCAGAGGCCC CTAACTGCAT CTCTTCAGTG CAACAGTACT GCGCAAACAG
361AGAAAGTCAG TGTTATCCAG GACTTTGTGA AAATGTGCCT GGAAGCCAAC ATCCCACTTG
421AGAAGGCTGA TCACCCAGCA GTCCGTGCTT TCCTATCTCG CCATGTGAAG AATGGAGGCT
481CCATACCTAA GTCAGACCAG CTACGGAGGG CATATCTTCC TGATGGATAT GAGAATGAGA
541ATCAACTCCT CAACTCACAA GATTGTTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
601GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
661AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAATCGATAC
721CGAATTCTCC GGACTGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
781aagatt

Download FASTA (ORF) (Full)