Construct: ORF TRCN0000466756

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003025.1_s317c1
Derived from:
ccsbBroadEn_03248
DNA Barcode:
CAAATACATCGGTACACGCTCTTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIGP (51227)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466756
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51227 PIGP phosphatidylinositol glycan... NM_001320480.1 100% 100%
2 human 51227 PIGP phosphatidylinositol glycan... NM_153682.2 100% 100%
3 human 51227 PIGP phosphatidylinositol glycan... NM_153681.2 84.8% 84.8% 1_72del
4 human 51227 PIGP phosphatidylinositol glycan... NM_016430.3 80.3% 79.1% 1_1delAins74;4_5insCTTCA
5 human 51227 PIGP phosphatidylinositol glycan... XM_017028365.1 80.3% 79.1% 1_1delAins74;4_5insCTTCA
6 mouse 56176 Pigp phosphatidylinositol glycan... NM_001159616.1 85.5% 90.2% (many diffs)
7 mouse 56176 Pigp phosphatidylinositol glycan... NM_019543.3 85.5% 90.2% (many diffs)
8 mouse 56176 Pigp phosphatidylinositol glycan... NM_001159618.1 70.3% 74.2% (many diffs)
9 mouse 56176 Pigp phosphatidylinositol glycan... NM_001159619.1 68.6% 72.4% (many diffs)
10 mouse 56176 Pigp phosphatidylinositol glycan... NM_001159617.1 55.3% 58.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
468
ORF length:
402
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gGAAAATTCA CCGTCGCCAT TGCCAGAAAG AGCGATTTAT GGCTTTGTTC
121TTTTCTTAAG CTCCCAATTT GGCTTCATAC TTTACCTCGT GTGGGCCTTT ATTCCTGAAT
181CTTGGCTAAA CTCTTTAGGT TTAACCTATT GGCCTCAAAA ATATTGGGCA GTTGCATTAC
241CTGTCTACCT CCTTATTGCT ATAGTAATTG GCTACGTGCT CTTGTTTGGG ATTAACATGA
301TGAGTACCTC TCCACTCGAC TCCATCCATA CAATCACAGA TAACTATGCA AAAAATCAAC
361AGCAGAAGAA ATACCAAGAG GAGGCCATTC CAGCCTTAAG AGATATTTCT ATTAGTGAAG
421TAAACCAAAT GTTCTTTCTT GCAGCCAAAG AACTTTACAC CAAAAACTGC CCAACTTTCT
481TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
541CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
601GTGGAAAGGA CGACAAATAC ATCGGTACAC GCTCTTGACG CGTTAAGTCg acaatcaacc
661tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)