Transcript: Human XM_017028365.1

PREDICTED: Homo sapiens phosphatidylinositol glycan anchor biosynthesis class P (PIGP), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PIGP (51227)
Length:
902
CDS:
368..694

Additional Resources:

NCBI RefSeq record:
XM_017028365.1
NBCI Gene record:
PIGP (51227)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017028365.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000276416 GTAACACCAAGCACGTATTTA pLKO_005 711 3UTR 100% 15.000 21.000 N PIGP n/a
2 TRCN0000164243 CCATAGTAACACCAAGCACGT pLKO.1 706 3UTR 100% 2.160 3.024 N PIGP n/a
3 TRCN0000163148 GCATTACCTGTCTACCTCCTT pLKO.1 458 CDS 100% 2.640 2.112 N PIGP n/a
4 TRCN0000276477 TTGCCAGAAAGAGCGATTTAT pLKO_005 148 5UTR 100% 15.000 10.500 N PIGP n/a
5 TRCN0000159744 GCTCTTGTTTGGGATTAACAT pLKO.1 502 CDS 100% 5.625 3.938 N PIGP n/a
6 TRCN0000276414 GCTCTTGTTTGGGATTAACAT pLKO_005 502 CDS 100% 5.625 3.938 N PIGP n/a
7 TRCN0000160068 CCATCCATACAATCACAGATA pLKO.1 546 CDS 100% 4.950 3.465 N PIGP n/a
8 TRCN0000160189 CAATCACAGATAACTATGCAA pLKO.1 555 CDS 100% 3.000 2.100 N PIGP n/a
9 TRCN0000276417 CAATCACAGATAACTATGCAA pLKO_005 555 CDS 100% 3.000 2.100 N PIGP n/a
10 TRCN0000162645 CCTGAATCTTGGCTAAACTCT pLKO.1 398 CDS 100% 3.000 2.100 N PIGP n/a
11 TRCN0000160209 CAGCCTTAAGAGATATTTCTA pLKO.1 615 CDS 100% 5.625 3.375 N PIGP n/a
12 TRCN0000285559 CAGCCTTAAGAGATATTTCTA pLKO_005 615 CDS 100% 5.625 3.375 N PIGP n/a
13 TRCN0000159948 GCCAAAGAACTTTACACCAAA pLKO.1 668 CDS 100% 4.950 2.970 N PIGP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017028365.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03248 pDONR223 100% 80.3% 79.1% None 1_1delAins74;4_5insCTTCA n/a
2 ccsbBroad304_03248 pLX_304 0% 80.3% 79.1% V5 1_1delAins74;4_5insCTTCA n/a
3 TRCN0000466756 CAAATACATCGGTACACGCTCTTG pLX_317 96.4% 80.3% 79.1% V5 1_1delAins74;4_5insCTTCA n/a
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