Construct: ORF TRCN0000466790
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001972.1_s317c1
- Derived from:
- ccsbBroadEn_10409
- DNA Barcode:
- TCCCTAGAATGCAATACTATTATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LSP1P3 (729862)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466790
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 729862 | LSP1P3 | LSP1 pseudogene 3 | NR_033961.1 | 64.8% | 1_99del;388_444del | |
| 2 | human | 6801 | STRN | striatin | XM_005264519.5 | 11% | 9.8% | (many diffs) |
| 3 | human | 6801 | STRN | striatin | NM_003162.4 | 10.5% | 9.4% | (many diffs) |
| 4 | human | 6801 | STRN | striatin | XM_011533073.2 | 10.1% | 9% | (many diffs) |
| 5 | mouse | 268980 | Strn | striatin, calmodulin bindin... | NM_011500.2 | 9.8% | 9.4% | (many diffs) |
| 6 | mouse | 268980 | Strn | striatin, calmodulin bindin... | XM_006524357.2 | 9.4% | 9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 381
- ORF length:
- 288
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGAGCAA CAAAAGCTTC TGGGAGCAGA 121 AGGGAGGCTC CAAGACCTCA TCAACAATTA CGGCCCAGAT TGCCTTCCTA CAGGGAGAAA 181 GGAAGGGCCA AGAAAATTTG AAGAAGGATC TCGTGAGGAT GATCAGAATG TTGGAGTATG 241 CTCTTAAACA GAAAAGAGCC AAATACCACA AGTTGAAATA TGGGACAGAA TTGAATCAGG 301 GAGCTATGAA GCCTCCAAGC TATGATTCTG ATGAAGGTAA TGAAACAGAA GTGCAGCCAC 361 AACAAAACAG CCAGTTAATG TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 421 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 481 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATCCC TAGAATGCAA 541 TACTATTATC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt