Construct: ORF TRCN0000466802

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006882.1_s317c1
Derived from:
ccsbBroadEn_12968
DNA Barcode:
ATGCCCGGGGAGTCGTACGTAAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LONRF1 (91694)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466802
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91694 LONRF1 LON peptidase N-terminal do... XM_011544694.3 76.7% 76.7% 1_378del
2 human 91694 LONRF1 LON peptidase N-terminal do... NM_152271.5 53.8% 53.8% 1_1071del
3 human 91694 LONRF1 LON peptidase N-terminal do... NM_001329976.2 52.3% 52.3% 1_1071del;1352_1353ins33
4 human 91694 LONRF1 LON peptidase N-terminal do... XR_002956651.1 33.9% 1_1137del;1180_1268del;2475_3673del
5 human 91694 LONRF1 LON peptidase N-terminal do... XR_002956652.1 33% (many diffs)
6 human 91694 LONRF1 LON peptidase N-terminal do... NR_138255.2 31.1% 1_1177del;1672_1673ins122;2304_3496del
7 human 91694 LONRF1 LON peptidase N-terminal do... NR_138256.2 30.2% (many diffs)
8 mouse 244421 Lonrf1 LON peptidase N-terminal do... NM_001081150.1 42.4% 44.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1317
ORF length:
1248
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaagagtct cagtctctca atgaacctag cccaaagcag agtgaagaaa
121taccagaggt cacttcagag cctgtcaaag gaagcttaaa ccgtgctcag tcagcacagt
181ctataaattc aacagaaatg cctgccagag aggactgttt aaaaagagtg tcctcagaac
241ctgttctgtc agttcaagaa aaaggtgttc tgctgaaaag aaagttgtct cttttagaac
301aggatgtgat tgtaaatgaa gatggaagaa ataagctgaa aaaacaagga gaaactccca
361atgaagtctg tatgttttcc ttagcttatg gtgatattcc agaagaatta atcgatgtct
421cagatttcga gtgttctctc tgcatgaggt tgttttttga gccagtaaca accccttgcg
481gacattcgtt ctgtaagaat tgtcttgagc gttgtttaga tcatgcacca tattgtcctc
541tttgcaaaga aagcttaaaa gagtatctag cagataggag gtactgtgtc acacagctgt
601tggaagaatt aatagtgaag tatctgcctg atgaactgtc tgagagaaaa aaaatatatg
661atgaagaaac tgctgaactc tcacacttga ccaagaatgt tccaatattt gtttgcacta
721tggcctaccc cactgtgcct tgccctctcc atgtatttga gccaagatac agattgatga
781ttcgaagaag tatacagact ggaaccaaac agtttggcat gtgtgtcagt gatacacaaa
841atagttttgc agattatggt tgtatgttac aaattagaaa cgtgcatttc ttaccggacg
901gaaggtctgt ggttgataca gttggaggaa agcggtttag ggttttaaaa agaggaatga
961aagatggata ttgcactgcc gacattgaat atctggaaga tgttaaggtt gagaatgaag
1021atgagattaa gaatcTCAGA GAGCTTCATG ATTTGGTTTA CTCTCAAGCC TGCAGCTGGT
1081TTCAGAATTT AAGAGACAGA TTTCGAAGCC AAATTCTTCA GCATTTCGGA TCAATGCCCG
1141AGAGGGAGGA AAACCTTCAG GCAGCCCCTA ATGGACCTGC ATGGTGTTGG TGGCTTCTTG
1201CAGTTCTCCC TGTAGACCCA CGATACCAGC TGTCGGTTTT GTCAATGAAG TCTTTGAAAG
1261AACGGTTGAC CAAGATACAG CATATACTGA CCTATTTTTC TAGAGACCAA TCTAAGTTGC
1321CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1381TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1441ATATATCTTG TGGAAAGGAC GAATGCCCGG GGAGTCGTAC GTAAGGACGC GTTAAGTCga
1501caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)